Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0162 ATGGAAGCGCTAGAACTGTGCACTCTAACATGGAACCCAATGAATCACGCATTTCGTCGAACACCTCAAACGCTCATTTTCCGCGCCTGCTCAACTTCCACCACCGCCGATACCAGGGCTGCCGGTCGCAATCGCTGGAGCTCGGCATCGTCGTCGTCGTCGTCGTCCAATTCGACTTCCGACAGGGATGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCGTATGCTTATGAATGGGACAAAACTCACGGTGCTAGTCAGCTGCAAGATATCTACAAGGATTTGGCAAATGGTGAGGAAAAAAATAGCGAGAGTGACCACGTATCTGTTGCGGGAAGAATTGTGGCCTGGAGGGATTTCGGAAAGCTTGCATTTCTCACATTAATAGATGATTATGGGTCAATTCAGCTCTATTTTGATAAGGAGAGACTCATAAACGATCAGTTTGAACAGTTAAAGGCGTATGTTGATACTGGTGATATATTAGGTGTAAAAGGAACAATAAAACGCACAAAAAAAGGAGAACTTTCTGTGTGTGTCCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACCGATAAAGATAAACGTTATCGACAGAGGTATCTAGATATGACCGCAAATCCAGAGGTAAAAGATGTATTACGTAAAAGAGGAAAGGTTGAATCAGAGATACGGAGGACTATGGATTCTTTAGGTTTTCTTGAAGTTAAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGATCTTTTATTACTTACCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATACGAGATGGGTCCAATATTTAGAAATGAAGGAATTTCAACTCGTCATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAGTTTGGCAGAGGAGATTGTCACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTACAGTTGATTATCAGGGAGTCGAGATATGTCTTGAAAAGCCTTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAATTGCTTGGGTCGATTTCAGTGAATTTGGAGACGATCTTGAGGTTGCAAAGCGTGTTACTCAGGATACCCTTGGAAAGAATCTTGATAACAAAGATAAAGCTTCCATTGAAGCATGCCGATCCATTGGCCACCTTCTTAATGAGGTTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAACCTACTTTTGTTCTAGACTATCCAATTGAGATATCTCCACTTGCCAAACCACACAGAAGAGGGGACGCTTGGAAGACCAAATTAGACAGCATGAAAAGAAGAGATCAGCTGTTTCAGCAAATGATGATAAAAAGGAAGGAAAGGAAGATGAAGATGACTCATATGAAGTAA 1503 0.4192 MEALELCTLTWNPMNHAFRRTPQTLIFRACSTSTTADTRAAGRNRWSSASSSSSSSNSTSDRDAIRAIRLKKVEELRSKGLDPYAYEWDKTHGASQLQDIYKDLANGEEKNSESDHVSVAGRIVAWRDFGKLAFLTLIDDYGSIQLYFDKERLINDQFEQLKAYVDTGDILGVKGTIKRTKKGELSVCVLSFAILTKSLLPLPDKYHGLTDKDKRYRQRYLDMTANPEVKDVLRKRGKVESEIRRTMDSLGFLEVKTPVLQGAAGGAEARSFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEMGPIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMSLAEEIVTRCALAVHGKLTVDYQGVEICLEKPWRRETMHNLVKEIAWVDFSEFGDDLEVAKRVTQDTLGKNLDNKDKASIEACRSIGHLLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRGDAWKTKLDSMKRRDQLFQQMMIKRKERKMKMTHMK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0162 500 Pfam tRNA synthetases class II (D, K and N) 212 467 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu11g0162 500 CDD LysRS_N 116 223 IPR044136 GO:0000166
Pvu11g0162 500 PRINTS Lysyl-tRNA synthetase signature 248 258 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu11g0162 500 PRINTS Lysyl-tRNA synthetase signature 264 280 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu11g0162 500 PRINTS Lysyl-tRNA synthetase signature 293 306 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu11g0162 500 PRINTS Lysyl-tRNA synthetase signature 311 328 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu11g0162 500 PRINTS Lysyl-tRNA synthetase signature 444 460 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu11g0162 500 PANTHER LYSINE--TRNA LIGASE 44 466 - -
Pvu11g0162 500 SUPERFAMILY Class II aaRS and biotin synthetases 211 468 IPR045864 -
Pvu11g0162 500 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 238 500 IPR006195 -
Pvu11g0162 500 Gene3D - 63 203 IPR012340 -
Pvu11g0162 500 PANTHER LYSYL-TRNA SYNTHETASE 44 466 - -
Pvu11g0162 500 Gene3D Bira Bifunctional Protein; Domain 2 205 485 IPR045864 -
Pvu11g0162 500 SUPERFAMILY Nucleic acid-binding proteins 62 204 IPR012340 -
Pvu11g0162 500 Pfam OB-fold nucleic acid binding domain 117 191 IPR004365 GO:0003676
Pvu11g0162 500 TIGRFAM lysS_bact: lysine--tRNA ligase 67 464 IPR002313 GO:0004824|GO:0005524|GO:0006430
Pvu11g0162 500 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0162 Pvu-Chr11 1235598 1246411 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0162 K04567 - gmx:100787720 781.556