Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0152 ATGAATTCCCTCCTTACCCAAACCCAACTTTCGGCTCCAATGAATTCAAAATCCAAACTTTGGACGAACCCAAGTTCAACATCAACCAGCTGTAGCAGTTGCAGTAGCAGCAGCATCAGCAGTGAGAACGATGACAGCCCCTTTTGTTCCCAACGCATACCCATCGTTGTTTCTGCTTTTTTTAATTCTCACCGGTCACTCGCAGTTCTCTCCGGCCATGTGGGTTCTGTTTCATCTTTGGCCCTGTGCGGTGAGTTCATCCTGAGTGCATCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGACTTGAGGCTCTTTGCGAAGTTCGGGCAAGGAGAAGGGTCGGTGAAAGCACTTGCGACGGTTGGCAACAAGGTTTTCACGGCACATCAAGATAGCAGGATCCGTGTTTGGAAGGTGTCCAGAAGCTCGGAGAACGTGTTCAAGCTTGTTGATTCTCTTCCCACGACCAAGGACTATTTGGGGAAGTTCATGAAGCAGAGGAACTATGTCCAAACTCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCGGATAGCATTTCTTGCTTGACGGTTCATAATGGGTTGATTTACTCTGGGTCGTGGGATAAGACTCTGAAGGTGTGGAGGCTCTCGGATTTGAAGTGTTTGGAGTCAGTTAAGGCTCATGATGATGCGATCAATGGGTTGGTGGCGTGTAAAGGGGTGGTGTATTCTGCTTCTGCCGATGGAAAGATTAAGGCTTGGGGGAGAAAAGAGGGGAAGGAGGAACATTGTTTGAAGGGGGTTTTGGAGGGTCATAAGGATGTTTCTTTTAATGCTGTTGTTGTTTCTGAGGATGGGAAGTGGGTTTACGGAGGAGGATCCGATGGGTTTGTGATGGGGTGGGAGGGGAATGGGGTTTCTGAGAGTTGGAAGCTGGTTTCTGAGTCCAAGGCACATGACATGGCTGTGTTGTGCATGTGTCTAATGGGGGAGTTTTTGTGCAGTGGTTCAGCGGATAAAAGCATAGGGATTTGGAGGAGAGAAGCTTTTGGTAAGCTTTGTAAAGTTGGTGTCATAAGTGGCCATGAAGGGCCTGTGAAGTGTTTGCAAGCTTCTTCTAGTAGGATTGGTGGTGGTTTTTTATTGTACAGTGGAAGCCTTGATAAAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATGATGCAGAAGTGGAGGATAACAGATGTACACAATTTGGCACAGAGAACAAGTCCATCCTCCCATGCTAG 1260 0.4786 MNSLLTQTQLSAPMNSKSKLWTNPSSTSTSCSSCSSSSISSENDDSPFCSQRIPIVVSAFFNSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGEGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDSLPTTKDYLGKFMKQRNYVQTRRHHKRLWIEHADSISCLTVHNGLIYSGSWDKTLKVWRLSDLKCLESVKAHDDAINGLVACKGVVYSASADGKIKAWGRKEGKEEHCLKGVLEGHKDVSFNAVVVSEDGKWVYGGGSDGFVMGWEGNGVSESWKLVSESKAHDMAVLCMCLMGEFLCSGSADKSIGIWRREAFGKLCKVGVISGHEGPVKCLQASSSRIGGGFLLYSGSLDKSVRVWWVPRYNDAEVEDNRCTQFGTENKSILPC* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0152 419 SUPERFAMILY WD40 repeat-like 64 395 IPR036322 GO:0005515
Pvu11g0152 419 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 404 IPR045182 -
Pvu11g0152 419 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Pvu11g0152 419 Pfam WD domain, G-beta repeat 353 391 IPR001680 GO:0005515
Pvu11g0152 419 Pfam WD domain, G-beta repeat 184 211 IPR001680 GO:0005515
Pvu11g0152 419 MobiDBLite consensus disorder prediction 16 45 - -
Pvu11g0152 419 Gene3D - 20 160 IPR015943 GO:0005515
Pvu11g0152 419 CDD WD40 66 391 - -
Pvu11g0152 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 221 IPR001680 GO:0005515
Pvu11g0152 419 Gene3D - 168 417 IPR015943 GO:0005515
Pvu11g0152 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 391 IPR001680 GO:0005515
Pvu11g0152 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 391 - -
Pvu11g0152 419 SMART WD40_4 215 252 IPR001680 GO:0005515
Pvu11g0152 419 SMART WD40_4 103 140 IPR001680 GO:0005515
Pvu11g0152 419 SMART WD40_4 306 343 IPR001680 GO:0005515
Pvu11g0152 419 SMART WD40_4 63 100 IPR001680 GO:0005515
Pvu11g0152 419 SMART WD40_4 259 299 IPR001680 GO:0005515
Pvu11g0152 419 SMART WD40_4 175 212 IPR001680 GO:0005515
Pvu11g0152 419 SMART WD40_4 349 392 IPR001680 GO:0005515
Pvu11g0152 419 PANTHER OS01G0946100 PROTEIN 10 404 - -
Pvu11g0152 419 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Pvu11g0152 419 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Pvu11g0152 419 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0152 Pvu-Chr11 1168059 1169318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0152 172 417 Miscellaneous Gene Families AT5G08390 24.324 1.54e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0152 - - gmx:100775295 699.508