Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0145 ATGAGTTACTCACCTCGTAGCCTTGTTGTAGAATACAACATTCGGTTCCTCAGAGGCTTCACGATATTGTTCCTTAGTTGTATAGCCATTCGGCTTAATCTGTGTCTTTCCAGCATCCCCTCTTCACTGAAATCCCTTCCCCTTGGAGGGCATTTAAAGTTTGATGAACATAGCCTTAGGAGTGTAGCCAGAGACTTTGGAAACAGGTATCAGTATCATCCAATGGCAGTACTACATCCAGAATCAGTTTCTGATATTGCAGCCACCATAAAGCATATCTGGCAGAGGGGTCCAAGCTCACACCTCACGGTTGCAGCAAGGGGCCACGGCCACTCACTCCAGGGCCAAGCTCAAGCTCATGGAGGAGTTGTGATCAACATGGAATCACTCAAGGTCCCAGAAATGCAGGTACATGTAGGCAATTCTCCTCCATACGTGGATGTCTCAGGTGGCGAGTTGTGGATAAACATCTTGCATGAGACTCTGAGATACGGGTTGGCGCCAAGATCGTGGACAGACTACCTGCATCTGACAGTTGGTGGCACTCTCTCCAACGCTGGTGTCAGTGGCCAAGCATTTAAGCATGGTCCCCAGATAAGTAATGTTCAGCAGCTGGAGATTGTTACAGGAACAGGGGAGTTGGTGAACTGTTCCAAGGAGCATAATGGGGAACTCTTTCACAGCGTTCTTGGGGGACTAGGCCAGTTTGGCATTATAACCCGAGCAAGAATTATCCTGGAACCAGCACCTACCATGGTGAAATGGATTAGAGTGTTGTACTCAGACTTCACAGCTTTCACAAGAGACCAAGAGCGGTTAATATCTTCAGAACAAACGTTTGACTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGCTGAATAACTGGAGATCATCCTTCAACCCACAAGACCCGGTTCAAGCTAGCCATTTCAAGTCAGATGGAAGAACCCTCTTCTGCCTTGAAATGGCTAAATACTTCAACGTGGAAGAAATTGATGCAGCAAACCAGGAAGTTGAGGAACATTTGTCCCGTTTAAGCTACATCCCATCAACCCTTTTTTCAACAGAAGTTACTTATGTGGATTTCTTAGACAGGGTGCATGTATCTGAGGTCAAATTGCGTTCAAAAGGGTTGTGGGATATTCCACATCCGTGGCTAAATCTTCTGATACCCAAAAGCCAAATACACAACTTTGCAGAAGTCGTCTTCGGGAAGATCCTAACAGAAACTAGCAACGGCCCCGTCCTTATCTACCCAGTGAACAAATCAAAGTGGGACAACAGAACTTCTGTTGTGATTCCTGAGGAAGATATTTTCTACTTAGTGGCATTTCTAACATCTGCAGTTCCCTCTTCCAATGGAACTGATGGCCTAGAATACATACTGAGTCAGAACAAAAGAATTTTAGAATTCTGTGAAACATCACAACTTGGAGTGAAGCAGTATTTGCCCCACTACACTACACAGCAAGAATGGAGGGCCCATTTTGGTCCTCAATGGGAGACTTTTCTGCAGAGAAAGTCTGTTTATGATCCATTAGCAATACTAGCTCCAGGCCAACGCATATTTCAAAAAGCAATAACCTTCTCATGA 1602 0.4494 MSYSPRSLVVEYNIRFLRGFTILFLSCIAIRLNLCLSSIPSSLKSLPLGGHLKFDEHSLRSVARDFGNRYQYHPMAVLHPESVSDIAATIKHIWQRGPSSHLTVAARGHGHSLQGQAQAHGGVVINMESLKVPEMQVHVGNSPPYVDVSGGELWINILHETLRYGLAPRSWTDYLHLTVGGTLSNAGVSGQAFKHGPQISNVQQLEIVTGTGELVNCSKEHNGELFHSVLGGLGQFGIITRARIILEPAPTMVKWIRVLYSDFTAFTRDQERLISSEQTFDYIEGFVIINRTGLLNNWRSSFNPQDPVQASHFKSDGRTLFCLEMAKYFNVEEIDAANQEVEEHLSRLSYIPSTLFSTEVTYVDFLDRVHVSEVKLRSKGLWDIPHPWLNLLIPKSQIHNFAEVVFGKILTETSNGPVLIYPVNKSKWDNRTSVVIPEEDIFYLVAFLTSAVPSSNGTDGLEYILSQNKRILEFCETSQLGVKQYLPHYTTQQEWRAHFGPQWETFLQRKSVYDPLAILAPGQRIFQKAITFS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0145 533 Pfam FAD binding domain 74 218 IPR006094 GO:0050660
Pvu11g0145 533 Gene3D - 252 485 IPR016170 -
Pvu11g0145 533 Gene3D - 60 526 IPR016167 -
Pvu11g0145 533 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 248 IPR036318 GO:0050660
Pvu11g0145 533 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Pvu11g0145 533 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 250 526 IPR015345 GO:0009690|GO:0019139|GO:0050660
Pvu11g0145 533 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 10 530 - -
Pvu11g0145 533 Gene3D - 127 251 IPR016169 -
Pvu11g0145 533 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 249 IPR016166 GO:0071949
Pvu11g0145 533 SUPERFAMILY FAD-linked oxidases, C-terminal domain 250 526 IPR016164 GO:0003824|GO:0050660
Pvu11g0145 533 PANTHER GULONOLACTONE OXIDASE 10 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0145 Pvu-Chr11 1092381 1094971 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0145 K00279 - gmx:100808619 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0145 11 1092381 1094971 Pvu11g0145 11 1092381 1094971 ECH