Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0143 ATGGATGGTTACGAAGCTACTAGAATTGTGTTTGCAAGGATCCAAAACTTGGACCCTGAGAATGCATCCAAAATCATGGGTGTGCTTCTTCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCAGAAGCTCTTGTTCACTCTGTGATTCTCAAAGCTCGCAAGGAGTTAGGTTTGCCTTCGAACTCTCCGCCAACGCCCTCTACTCCACCTTCTCCTTCGCCCTTCCTTTCGAGGCAAAGCTCTGCTTCTTCAAGGCTTGGTGCTATCAACCTACCTCCTGCTCTCACCATTCCAAACCCTTCTTCTTCATGGCCTCCTACTATGTCTGAGCTTCAAACCCCAGATGGTTTGATGAGCCCCAATCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTGCCCTTTTATGTCAACGGAGGCTCAGATTCAATTGATGACTTCCAACTTCAGGATCAGCTTTCTTTCCTCAATGATGGTTCTCCTACTAGTACTGTTCTTGCTCACAAGAACAACCCAGATTTGTTTTACCCAACTCACTCAGACTTGTCCTCAAGTCCTACTGGTGTTGCTGACCCTGCTCTCTTTCCCTCCTACGGTTGGGGAGGGTCTCTTCATAGAAGGAGTTGCTCAGTCAATGATGCTTGTTTAGGCTCTGAGGACCCCAACTCCGGGTTGGGATGGAAACCTTGCCTTTACTTTGCAAGAGGGTACTGCAAAAATGGGACAAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCAGATGGTCCTGCTGCAATGGTAGGGTCTCCGAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCCACTTTTCCATACTCGCCCAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAACGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGGTAAACCCAGCTTCCCGGCAGATCTACTTGACTTTTCCAGCAGACAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTGCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTGACCTTTGTTTATCCTGAGACTGTGAAGCTAATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCCACTGGACTAGATGCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTATGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCATGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAACATGTTCAACCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAGGCCCCAAAGGAGACTAGTTCATCTTCTGCTCCAGCTAGTACTGTATCGGTTTCTGCTGGTCAGCAGCCGGTCAACATATCTGTTGTTGGCAAGGAAATGGTGGTCAATGGAGAGAATGGATATAATGAAGGCAATGGGAAGCAGAGCCCTAGTCATGAAGATCGTGAATTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAATGAGGCCATTGATGCAGATGCCTCAGGTGCATCTGCCAACTCTAAATATGGTACTAGTGCATTACTTCCACCAGCTTCTGCTCTTGACATGGGAACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCCTCTGGTCATGGAACTATTGGGATGTTAGCAGGCACCGGTGGACCAATTGGCATTTAG 2118 0.4665 MDGYEATRIVFARIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSASSRLGAINLPPALTIPNPSSSWPPTMSELQTPDGLMSPNHLVVGSSTSSSSLPFYVNGGSDSIDDFQLQDQLSFLNDGSPTSTVLAHKNNPDLFYPTHSDLSSSPTGVADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGPAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMASSTFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQHALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVLPSFHTSSEAPKETSSSSAPASTVSVSAGQQPVNISVVGKEMVVNGENGYNEGNGKQSPSHEDRELQECLEHNLPDSPFASPTKAAGDFMVSFSNGPNEAIDADASGASANSKYGTSALLPPASALDMGTFKSYNCQIPRFSSGHGTIGMLAGTGGPIGI* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0143 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 439 IPR000504 GO:0003723
Pvu11g0143 705 MobiDBLite consensus disorder prediction 440 462 - -
Pvu11g0143 705 MobiDBLite consensus disorder prediction 590 610 - -
Pvu11g0143 705 MobiDBLite consensus disorder prediction 522 573 - -
Pvu11g0143 705 SUPERFAMILY CCCH zinc finger 233 255 IPR036855 GO:0046872
Pvu11g0143 705 MobiDBLite consensus disorder prediction 525 573 - -
Pvu11g0143 705 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 693 - -
Pvu11g0143 705 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872
Pvu11g0143 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 420 IPR000504 GO:0003723
Pvu11g0143 705 SUPERFAMILY RNA-binding domain, RBD 375 449 IPR035979 GO:0003676
Pvu11g0143 705 CDD RRM_AtC3H46_like 365 434 IPR034365 -
Pvu11g0143 705 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 693 - -
Pvu11g0143 705 SMART c3hfinal6 232 256 IPR000571 GO:0046872
Pvu11g0143 705 Gene3D - 310 454 IPR012677 -
Pvu11g0143 705 MobiDBLite consensus disorder prediction 61 87 - -
Pvu11g0143 705 Gene3D - 224 296 - -
Pvu11g0143 705 SMART rrm1_1 364 434 IPR000504 GO:0003723
Pvu11g0143 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 255 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0143 Pvu-Chr11 1066807 1071403 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0143 - - gmx:100801341 1218.37