Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0142 ATGGATGGTTACGAAGCTACACGAATTGTGTTCTTCAGGATCCAAACTTTGGACCCTGAAAATGCTTCCAAAATCATGGGTTTACTTCTGCTTAAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTTCACTCAGTGATTGTTAAAGCCCGCAAGGAGTTAGGTTTACCCTCGAACTCTCCGCCAACACCCTCCACTCCTCCTTCTCCTTCACCCTTCCTTCCTAGGCAGAACTCTACTTCTTCAAGGCTCAGTGGTATCAACCTCCCTCCTGCTCTCACCATTCCAAACCCTTCTTCTTCATGGCCTACTATGTCTGAGCTTCAAACCCCTGATGGTTTGATGAGCCCCAACCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTGTCCTTTTATGCAAATGGAGGCTCAGATCCAATTGATGACTTCCAACTTCAAGACCAGCTCTCTTTCCTGAATGATGGTTCTGCTCCTGCTCACAAAAACAACCCTGATTTGTTTTACCCTCGTCACTCAGACTTGTCTTCAAGTCCTACTGCTGCTTCTGACCCTGCTCTCTTTCCTTCCTACGACTGGGGAGGGTCTCTTCATCGCAGGAGTTGTTCTGTCAATGATGTTTGTTTGGGCTCTGAGGACTCCAATTCTGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTCGGGGATACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATACTGATGCTGCTTCTCCTGCTGCAATGGTTGGGTCTCCTAGCAAGCTTGAGATGATGGAGCAGTGCCATGAGCTTTTCAGATCTAAATCTTCTCAACAAAGACTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCTACTTTTCCATACACCCCAAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCTGCAGCTGCAGCTCTGATGATGAATGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCCCTGAACAGTCCTGGAATGATAAACCCAGCTTCCCGGCAGATCTACTTGACTTTCCCCGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTTGTTTACCCAGAGACAGTGAAGCTTATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGTACAGGAAGCATCAGCAGGTAGATAGAGGAGATTTTTCACCAAGTGGTACTCCCACTGGACTAGATTCTAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACGCAAGACATGTTGTGGAGGAGGAAGCTGGAGGAGGAAGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGCTGATGGGTCTGCAGCTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCCACCCACTCTCTTAACATGTTCAACCAAAATCTTCTTCATCCTTCCTTTCACAATATTTCCGAGGCCCCAAGGGAGAATGGTTCAACTTCTGCTCCACCTTGTACTGCTTCAGTTTCTGCTGGTCAGCAATCTGTCGACATTTCTATTGGCAAGGAAGTGGTGGTCAATGGCGAGAATGGATTGAATGAAGGCAATGAGAAGCAGAACTCTGGTCATGAAGATATTGATTTACAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGAGACTTGATGGTTTCCTTCTCTAATGGAACTGCTGAGGCCATTGACACAGATGCCTCAGGTGCATCTGTCAATTCCAAATTTGGTACTAGTGCATTGCTTCCACCAGCATCTGCAATTGATATGGCTACTTTCAAATCCTTTAACTGCCAAATACCAAGGTTCTCCTCTGGCCATGGAACTTTTGGGATGTTCCCAGGCACAGGTGGCCCGATTGGCATTTAG 2109 0.4609 MDGYEATRIVFFRIQTLDPENASKIMGLLLLKDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFLPRQNSTSSRLSGINLPPALTIPNPSSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLSFYANGGSDPIDDFQLQDQLSFLNDGSAPAHKNNPDLFYPRHSDLSSSPTAASDPALFPSYDWGGSLHRRSCSVNDVCLGSEDSNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDTDAASPAAMVGSPSKLEMMEQCHELFRSKSSQQRLAAASQLMASSTFPYTPKCMNLLLQQQQNDTQRAAAAALMMNEDLHKFGRSRLERNDFSLNSPGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKHQQVDRGDFSPSGTPTGLDSRDQFDLQLGGRMFYNTQDMLWRRKLEEEADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSLNMFNQNLLHPSFHNISEAPRENGSTSAPPCTASVSAGQQSVDISIGKEVVVNGENGLNEGNEKQNSGHEDIDLQECLEHNLPDSPFASPTKAAGDLMVSFSNGTAEAIDTDASGASVNSKFGTSALLPPASAIDMATFKSFNCQIPRFSSGHGTFGMFPGTGGPIGI* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0142 702 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 690 - -
Pvu11g0142 702 Gene3D - 219 294 - -
Pvu11g0142 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 416 IPR000504 GO:0003723
Pvu11g0142 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 435 IPR000504 GO:0003723
Pvu11g0142 702 SUPERFAMILY CCCH zinc finger 228 250 IPR036855 GO:0046872
Pvu11g0142 702 Gene3D - 307 449 IPR012677 -
Pvu11g0142 702 ProSiteProfiles Zinc finger C3H1-type profile. 225 252 IPR000571 GO:0046872
Pvu11g0142 702 SMART rrm1_1 360 430 IPR000504 GO:0003723
Pvu11g0142 702 SUPERFAMILY RNA-binding domain, RBD 371 452 IPR035979 GO:0003676
Pvu11g0142 702 MobiDBLite consensus disorder prediction 439 464 - -
Pvu11g0142 702 MobiDBLite consensus disorder prediction 61 128 - -
Pvu11g0142 702 MobiDBLite consensus disorder prediction 67 81 - -
Pvu11g0142 702 CDD RRM_AtC3H46_like 361 430 IPR034365 -
Pvu11g0142 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 250 IPR000571 GO:0046872
Pvu11g0142 702 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 690 - -
Pvu11g0142 702 SMART c3hfinal6 227 251 IPR000571 GO:0046872
Pvu11g0142 702 MobiDBLite consensus disorder prediction 82 128 - -
Pvu11g0142 702 MobiDBLite consensus disorder prediction 549 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0142 Pvu-Chr11 1051759 1057227 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0142 - - gmx:100801341 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0142 11 1051759 1057227 Pvu11g0142 11 1051759 1057227 ECH