Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0107 ATGGCGTGCATAAAAGGGGTGAATCGATCGGCGTCGGTAGCGCTGGCGCCCGACGCGCCGTACCTGGCTGCCGGGACCATGGCTGGCGCCGTTGATCTGTCCTTTAGCTCCTCCGCAAATCTTGAGATATTCAAGCTTGATTTTCAGTCTGACGATTCGGAACTGCCACTCGTCGCCGAGTGCCCGAGCACCGACCGCTTCAACCGTCTAACGTGGGGAAAGAACGGTTCCGGCTCCGAAGAATTCGCTCTTGGCCTCGTTGCTGGCGGGTTGGTGGATGGTCACATTGACATCTGGAATCCTCTCACTCTGATCCGCTCGAAGTCAAATCAAAGTCCTCGTGTTGGACACCTTGACAGGCATAAAGGACCAGTTCGTGGTCTTGAGTTTAATGTCATTGCACCAAATCTTCTTGCATCTGGGGCCGAGGATGGTGAAATTTGCATATGGGATTTGACCAATACTTCCGAACCTAATCTTTTTCCATCACTAAAGAGTACTGGCTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAGCACATATTGGCATCTACTTCATATAATGGGACCACAGTGGTCTGGGACCTGAAGAAGCAAAAGCCAGTGATAAGCTTTGCAGATTCTGTTAGAAGGAGGTGTTCTGTTTTGCAGTGGAATCCTGATGTTGCCACACAACTTGTCGTTGCATCAGATGAAGATGGCTCTCCTGCTTTGAGGCTTTGGGATATGAGGAATATAATTTCACCAATAAAGGAGTTTGTGGGACACACTAGAGGTGTGATTGCAATGTCGTGGTGTCCCAATGATAGCTCTTATTTGCTTACCTGTGGTAAAGATAGCCGAACTATATGCTGGGACATGATTTCTGGAGAGATAGCCTATGAATTGCCAGCTGGGACCAACTGGAATTTTGATGTGCATTGGTATCCCAAGATACCTGGAATAATATCAGCATCTTCCTTTGATGGAAAAATTGGCATATATAATATTAAGGGTTGCCGTCAAAGTGGTGCTGGGGAAAATGATTTTGGTGCAGTACCATTGAGAGCACCAAAATGGTACAAGCGTCCTGCCGGTGTGTCTTTTGGTTTTGGAGGCAAACTAGTGTCATTTCATCCCAGGGCATCATCGACAGGTTCTCCTGCTGGTGCTTCTGAGGTTTATGTGCATAATTTGGTCACTGAAAATGGTCTAGTGAGTCGGTCTTCTGAATTTGAAGCTGCCATACAGAATGGTGAAAGGTCTTTGTTGAGGGTTTTATGTGATAAAAAATCACAGGAATCAGAATCTGAGGAGGAAAGGGAAACATGGGGCTTTTTAAAAGTTATGTTTGAAGATGATGGGACTGCACGGACAAAACTCCTCTCACATCTTGGTTTCAATGTACCTAGTGAAGCAAAAGACACAATTAATGATGAACTTTCCCAAGAAGTAAATGCACTTGGACTGGAGGACACAACTGTTGACAATACTGGACATGTGGCTACTAATGAAACCAGTAATTTCTCTACTGATAACGGAGAGGATTTCTTTAACAATCTTCCCAGTCCTAAAGCCGATACTCCTTTATCTTCGTCTGTTGGCAACTTTGATATTGCTGAAAATGCCAATGGTTCTGAGAAAATTCAAGATGATGCAGAAATGGAGGAGAGCAGTGACCCTTCATTTGATGACAGTGTTCAGCATGCTTTAGTTGTTGGGGACTACAAGGGGGCAGTTTTGCAATGTATTTCTGCAAATAAGTGGGCAGATGCATTAGTCATTGCACATGTTGGGAATGCTTCCTTGTGGGAAAGTACTCGTGATCAATACCTTAAAATGGTCCGATCACCATACTTGAAGATTGTATCAGCAATGGTGAGCAATGATCTACTGAGCTTAGTGAACACTAGGCCCCTGAAATTCTGGAAAGAAACCCTTGCTCTTCTTTGTAGTTTTGCTCAGAGAGATGAATGGACCATGCTTTGTGACACACTTGCTTCAAAGCTAATGGGGGCTGGCAATACATTAGCTGCAACCCTGTGTTATATATGTGCTGGGAATATTGATAAAACTGTTGAAATTTGGTCAAGGTGCCTGTCTAATGAGTACGAGGGGAAATCTTATGTTGACCTTCTTCAGGATTTAATGGAAAAGACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCGGTTTAGTGCTTCTCTGTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAGCTAGTCAAGGGCTATTGACTACAGCGATGGAGTATTTAAAACTTTTGGGTTCTGAAGAACTGTCGCCTGAACTTACGATTTTAAAAGATCGAATTGCACTTTCTACAGAACCTGAGAAAGAGTTCAAAACCGCTGCTTTTGAAAATACTCAAGCACATGGTGGGTCCTATTACGGTGCTGATAATTCCAACTATAATAGAAATTATTATCAGGAGTCAGTATCCACTCAAGTGCAGCATGGTGTTTCTGGAATTCAATATCCTGAAAGCTATCAACAGCCATTTGATCCTAGATATGGAAGAGGTTATGGTGCTCCTACTCCACCCCAGCAACCTCAACAGCCTAATTTGTTTGTTCCACCGCAGACTGCTCAAGTTGCACAAACTCCCCAGCTGAATTTCTCAAATACTGCTGTTGCACCACCTCCTTTGAGAACTTTTGATCCTCAAACTCCTCCCGTGCTTAGAAATGTGGAAAAATATCAGCAGCCCACATTGGGTTCTCAGTTGTATAATACAGCCACCAATCCACCTTACCAGCCTACACCCTCTGCTACATCACAAGTGGGCTTAGGTCATGGCCACAACCTGTCACAAGTTGCGGCCCCTACCCCAAATCAAATGGGATTCATGCCAGTCTCCAGTTCTGGTGGTGTCCAAAGACCTGGAGCGGGATCAATACAACCACCCAGTCCCCCTCAAGTGCAACCTGTGCAACCAGCTGCTGCACCACCAGCTCCACCTCCTACTCTACAGACTGCTGATACTTCAAAAGTACCTGGGCATCAAATGCCTATTGTCACAACATTGACAAGACTCTTCAACGAGACATCAGATGCCCTGGGAGGTTCCCGTGCAAACCCAGCAAAGAAGCGGGAGATAGAAGACAACTCAAAGAGACTTGGTGGGTTGTTTGCCAAGTTGAATAGTGGAGATATATCCAAAAATGCTTCTGATAAGCTCCTTCAGCTTTGTCAGTCATTAGACAATGGTGATTTCGGTTCTGCCCTACAAATTCAGGTTCTTCTTACTACTACCGAGTGGGATGAATGCCAGTCCTGGTTAGGTTCACTGAAGCGGATGATCAAGACAAGGCAGAGCGTGAGACTAAGTTAA 3354 0.4481 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDSELPLVAECPSTDRFNRLTWGKNGSGSEEFALGLVAGGLVDGHIDIWNPLTLIRSKSNQSPRVGHLDRHKGPVRGLEFNVIAPNLLASGAEDGEICIWDLTNTSEPNLFPSLKSTGSASQGEISFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVLQWNPDVATQLVVASDEDGSPALRLWDMRNIISPIKEFVGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDMISGEIAYELPAGTNWNFDVHWYPKIPGIISASSFDGKIGIYNIKGCRQSGAGENDFGAVPLRAPKWYKRPAGVSFGFGGKLVSFHPRASSTGSPAGASEVYVHNLVTENGLVSRSSEFEAAIQNGERSLLRVLCDKKSQESESEEERETWGFLKVMFEDDGTARTKLLSHLGFNVPSEAKDTINDELSQEVNALGLEDTTVDNTGHVATNETSNFSTDNGEDFFNNLPSPKADTPLSSSVGNFDIAENANGSEKIQDDAEMEESSDPSFDDSVQHALVVGDYKGAVLQCISANKWADALVIAHVGNASLWESTRDQYLKMVRSPYLKIVSAMVSNDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMGAGNTLAATLCYICAGNIDKTVEIWSRCLSNEYEGKSYVDLLQDLMEKTIVLALATGQKRFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSEELSPELTILKDRIALSTEPEKEFKTAAFENTQAHGGSYYGADNSNYNRNYYQESVSTQVQHGVSGIQYPESYQQPFDPRYGRGYGAPTPPQQPQQPNLFVPPQTAQVAQTPQLNFSNTAVAPPPLRTFDPQTPPVLRNVEKYQQPTLGSQLYNTATNPPYQPTPSATSQVGLGHGHNLSQVAAPTPNQMGFMPVSSSGGVQRPGAGSIQPPSPPQVQPVQPAAAPPAPPPTLQTADTSKVPGHQMPIVTTLTRLFNETSDALGGSRANPAKKREIEDNSKRLGGLFAKLNSGDISKNASDKLLQLCQSLDNGDFGSALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVRLS* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0107 1117 MobiDBLite consensus disorder prediction 928 968 - -
Pvu11g0107 1117 Gene3D - 353 782 - -
Pvu11g0107 1117 MobiDBLite consensus disorder prediction 972 997 - -
Pvu11g0107 1117 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Pvu11g0107 1117 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 154 - -
Pvu11g0107 1117 Pfam Sec23-binding domain of Sec16 566 761 IPR024298 -
Pvu11g0107 1117 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN, ANCESTRAL COATOMER ELEMENT 1, SEC16/SEC31-RELATED 2 1115 - -
Pvu11g0107 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Pvu11g0107 1117 MobiDBLite consensus disorder prediction 928 1006 - -
Pvu11g0107 1117 PANTHER SEC31-RELATED PROTEIN 2 1115 IPR040251 GO:0006888
Pvu11g0107 1117 Gene3D Functional domain of the splicing factor Prp18 1005 1116 - -
Pvu11g0107 1117 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Pvu11g0107 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Pvu11g0107 1117 SMART WD40_4 252 292 IPR001680 GO:0005515
Pvu11g0107 1117 SMART WD40_4 54 100 IPR001680 GO:0005515
Pvu11g0107 1117 SMART WD40_4 161 201 IPR001680 GO:0005515
Pvu11g0107 1117 SMART WD40_4 295 335 IPR001680 GO:0005515
Pvu11g0107 1117 SMART WD40_4 111 151 IPR001680 GO:0005515
Pvu11g0107 1117 SMART WD40_4 204 248 IPR001680 GO:0005515
Pvu11g0107 1117 Gene3D - 1 337 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0107 121 345 Miscellaneous Gene Families AT5G08390 22.907 1.99e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0107 K14005 - gmx:100788642 2018.43