Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0103 ATGGCATTTCACGTAGCTTGTCCAATTACATGTCGCCGAATCTGTTTCTGCGCGCTAGGGTTTCCGCGGGCGCTTCACGCACCGGACGACGGTTCCGCTGCCAATGGCTTCGCGCACGACGTCGCCGCGCTCCGCGACTTCCTCGCCGACACATGCAGGGACGATGTCACCGTTCAGGTTTCTGTCCCCAAGGTTCTGCCGCCGCCTCCGCCGCCGCCGGACGGTCTTCCTCTCAACGCCGACGCGCTCGATGAGTCCGCCTCCATGAAGGCCAAGCGCATCGCGCTGCAGCGCAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAGTACGCTCGCCGCTTTGAGTCTGGCGACGTTGTGAATACTCCAGGAAATGTTACCGGAGAGGAGCAGGGGCAAGCCAATAGGAGCTATTGTCGAATTTGCAAGTGCGGAGAAAATGAAGGAAGTGAGAAAGCTCAGAAGATGCTGTCCTGCAAAAGTTGTAGTAAAAAGTACCACAGGAACTGCTTGAGAAGTTGGGGTCGAAATAGAGATTTATTTCATTGGAGCTCATGGACCTGTCCTCTTTGCCGAATTTGTGAGGCTTGCAGAAGGACCGGTGATCCTAGTAAGTTCATGTTTTGCAAAAGGTGCGATGGTGCTTACCACTGTTACTGTCTGCAACCTCCTCATAAGAGTGTTTGTAATGGGCCCTATTTGTGCACAAAACATGCAAGGTGTCACAGTTGTGGATCGAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTATGGCATACACAAACTGCGATGCATGTGGAAGATTATTTACAAAAGGGAACTACTGTCCTGTTTGCTTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGTTGTGATACTTGCCAGCTCTGGGTACATTGTCAGTGTGATAATATCAGTGATGAAAAATATCACCATTTTCAAGTGGATGGGAATTTGCAGTATAAATGTCCCACATGTCGTGGGGAATGTTATCAGGTCAAGAATCCTGAAGATGCTGCACAAGAGATTTGGAGGAGAAGGAATGTTGCTGAGAGAGATTTGATTGCTAGCTTGAGGGCTGCAGCTGGTTTGCCTACTCAAGACGAGATATTTTCCATTTCACCATTTTCAGATGATGAGGATAGTGGGCCTTTGAAATTAAAGAGTGAATATACCCGTTCCTTTAAGTTCTCCCTGAAGAATCTGGCCAATGACTCACCAAAGAAGAAATCTTCAAGCAAAAAAACTGCTAAGAAAAAAGACTCTGAGTCATTTATGACTAATAAAATTGACACACACAATAGTTTTGAAGGACACAGTGATGTTAAATCTTTGCATAGCTTAGACGATGATAAAAATGATGATATACAATCCCAGAGAAATGATGGTCTAGATGTTTACTCATCACCTGCTACTGGAAGCTTGAGTCAAACTGAAGCATCTTGCCCTATTATTCAACCGGGAATTTTGAAGCATAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAAGAAACCTAGAGTTGTTAGAATTAAAAGCAACAAGGCACATATTCTGGATAGTGAGGAGGAAAGTGGAAAACAGAGTGTTAAAACTCAGAATGTGAAGGGGAAGAAGTTGGTTATAAATTTGGGAGCCCGGAAAATTAATGTGGCCAGTTCCCCACGGTCTGATACGTCAAGCTGCCAAAAAGATCAAGATCTGGTGACTGTTAATGGAAATGAAGATATAAGCCAATCCAAGAAGGGAGAAAAAATTGCGTTGGAGAGACAAGATGACACAGCTAGACATATTGATGGTAAAGGAAATAGAGTTGATTCTGGACAATCAAAAATTTTCAAGGTTTCGGGAAGGGAAGGAAATTTGATTAAGCTGGGAAAAGTTAAGCCAGATGTTTCTGAATTCAACCTGACTGCCCGTAAAGGCAATATGTCTGATGGGCGTATAAAACCTAGTATTGATGGAATGATTGGTCAGGTTGGAATGAAAGCCACATCAAGAGGTGAAAAGACATATTTGGGGAAGCAATCAGAAGGTAGCTCTGATGCAAATGAGGAGATAGATGACAACAATAACCGGACACCCTCGTATTCTTTGCCAAAAGATTCTAAACCTTTACTAAGATTTAAGTTCAAGAAACCCAGCATTGAAACTCAAAATTCTCCTCATAGGGAGGAGGAGAAGACAACAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCACCTTTTAAAACATCATTTACTGAGTCTGAAGGAGTAAGTCAATCACATCAAGACAGTGCAATGGATGAGATCATGGATGCAAACTGGATTTTGATGAAATTGGGAAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGTGGTTACTGACGTAGTTGAAGGCACTTCAAAGTTATATGTTGCATTAGACGATGGGAAAGTGAAGACCTTGGATCTCAGGAAACAGGGGGTCCGTTTTGTTCCTCAAAAGCAGAAGAGATCAAAGACATGA 2541 0.4416 MAFHVACPITCRRICFCALGFPRALHAPDDGSAANGFAHDVAALRDFLADTCRDDVTVQVSVPKVLPPPPPPPDGLPLNADALDESASMKAKRIALQRKGAAAMIAAEEYARRFESGDVVNTPGNVTGEEQGQANRSYCRICKCGENEGSEKAQKMLSCKSCSKKYHRNCLRSWGRNRDLFHWSSWTCPLCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKSVCNGPYLCTKHARCHSCGSNVPGNGLSVRWFMAYTNCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDTCQLWVHCQCDNISDEKYHHFQVDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRRNVAERDLIASLRAAAGLPTQDEIFSISPFSDDEDSGPLKLKSEYTRSFKFSLKNLANDSPKKKSSSKKTAKKKDSESFMTNKIDTHNSFEGHSDVKSLHSLDDDKNDDIQSQRNDGLDVYSSPATGSLSQTEASCPIIQPGILKHKFVDEVMVSDEEKKPRVVRIKSNKAHILDSEEESGKQSVKTQNVKGKKLVINLGARKINVASSPRSDTSSCQKDQDLVTVNGNEDISQSKKGEKIALERQDDTARHIDGKGNRVDSGQSKIFKVSGREGNLIKLGKVKPDVSEFNLTARKGNMSDGRIKPSIDGMIGQVGMKATSRGEKTYLGKQSEGSSDANEEIDDNNNRTPSYSLPKDSKPLLRFKFKKPSIETQNSPHREEEKTTIKGQRSKRKRPSPFKTSFTESEGVSQSHQDSAMDEIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGVVTDVVEGTSKLYVALDDGKVKTLDLRKQGVRFVPQKQKRSKT* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0103 846 ProSitePatterns RecR protein signature. 264 286 IPR015967 GO:0006281|GO:0006310|GO:0046872
Pvu11g0103 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 333 IPR013083 -
Pvu11g0103 846 ProSiteProfiles Zinc finger PHD-type profile. 136 194 IPR019787 -
Pvu11g0103 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 192 IPR013083 -
Pvu11g0103 846 PANTHER PHD FINGER FAMILY PROTEIN 2 840 - -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 580 613 - -
Pvu11g0103 846 PANTHER HISTONE ACETYLTRANSFERASE 2 840 - -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 464 483 - -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 710 738 - -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 647 767 - -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 583 609 - -
Pvu11g0103 846 ProSiteProfiles Zinc finger PHD-type profile. 274 333 IPR019787 -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 751 767 - -
Pvu11g0103 846 ProSitePatterns Zinc finger PHD-type signature. 139 191 IPR019786 -
Pvu11g0103 846 SMART ring_2 139 191 IPR001841 -
Pvu11g0103 846 SMART ring_2 277 330 IPR001841 -
Pvu11g0103 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 243 IPR013083 -
Pvu11g0103 846 CDD RING-H2 139 192 - -
Pvu11g0103 846 SUPERFAMILY FYVE/PHD zinc finger 273 332 IPR011011 -
Pvu11g0103 846 ProSiteProfiles Zinc finger RING-type profile. 139 192 IPR001841 -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 408 483 - -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 411 431 - -
Pvu11g0103 846 SUPERFAMILY FYVE/PHD zinc finger 130 192 IPR011011 -
Pvu11g0103 846 SUPERFAMILY FYVE/PHD zinc finger 183 244 IPR011011 -
Pvu11g0103 846 SMART PHD_3 193 239 IPR001965 -
Pvu11g0103 846 SMART PHD_3 141 192 IPR001965 -
Pvu11g0103 846 SMART PHD_3 276 331 IPR001965 -
Pvu11g0103 846 MobiDBLite consensus disorder prediction 438 463 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0103 - - gmx:100815407 1547.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0103 11 757497 764409 Pvu11g0103 11 757497 764409 ECH