Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0065 ATGAGCTTAACCTCAGAAAAACACAACCTTGTTCGTCTTCTGGAACAATGTTCAAGCATGAGAGAGATGAAGCAAATCCACGCCTACGCCATCACCACCTCCCTCGCTCGCTTCACCTTCATCTCAAGCAAACTCTTGGCCTTCTGCGCCCTCTCTCCCCACGCCGATCTCCGCCACGCCCACACCCTCTTCTCCGCCATTCCTTTCCCCACTCTCTTCCACTACAACACCGTCATCGCCGCCTTCTCCCGCCACTCCTCCTCCCTCTTCCTCCGAATGCTAAACGACACCGTTCGCCCCAACGCCCGCACCCTCACCCTCCTCCTCTCCAAAGCCTCCCCTTCTCTCTCCTTCCTCCACCAGCTCCACTCCCTCACCCTCCGACTCGGCCACCTCGCCGACTCCTACGTCACCACCTCCCTCGTCGCCGCCTACTCCAACCACTCCCGCACAAGCGCCGCGCGCCACGTGTTCGACGAAAGTCCCCACCCAAACGTCGCGTGCTGCACAAGCCTCCTCACCGGCTACTGCAACAACGGCCTGCTAAACGACGCCAGGGAGGTGTTCGACGCAATGCCCGACAAAAACGACGTGTCATACAGCGCCATGGTCTCCGGCTACGTCAGAAACGGTTTTTCCCGCGAGGCCATTGAGCTTTTTCGTGACCTCAGGAAAAACTGTTTCGCAACCGTGAAGCCCAACAACTCTCTTCTGGTGAGCGTTCTCGGCGCGTGTGCTGCCGTTGGCGCGTTCGAAGAAGGGAAGTGGATTCACTCCTACGTCCACCGAAGTGGGGAGTTGGAATATCACGAAGTTGAGCTCGGAACGGCGTTGATCGATTTCTACGCAAAATGCGGCTGCGTGGAGCCTGCTGAGCGGTTGTTCGGGAAGATGAAAAGCAGAGACGTGGCGGCGTGGAGCGCCATGATACTGGGCATGGCCATGAACGGGAAGAATGGTGGGGCACTCGAGGTGTTTGAGGAAATGGAGAAGGTGGGGCCCAGACCCAATGGGGTTACCTTCATCGGCGTTCTGGCGGCGTGCAATGACAGAGAACTGTGTGGTAGAGCAGTTGGGTTGTTGGAATGCATGAGGGAGAAATATGGGATTGCGGCGTGGATTGAGCACTATGGGTGCGTGGTGGATGTGTTGGCTCGTGCAGGGAAGATCGAGGAGGCGTTGGAGGTGATGAAGGGCATGAAAATGGAAGCTGACGGAGCCATGTGGGGGTGCTTGGTGAATGGGTGTTTGATGCATGGCTACGTGGAGTTGGGACACAGAATTGGGAGGTATTTGGTGGAGTTTGAATCTGGGCACAGTGGAAGGTACGTTGTTCTCTCTGAGCTCTACGCCAGAATGGGAAGGTGGGAGGCTGTTTTGGACACCAGGAATTTGATGAAACAGAGAGCTGTGACACCTGTTACTGCCTCCAGTTTCATAGAGATTCGTCAGTTCTGA 1458 0.5645 MSLTSEKHNLVRLLEQCSSMREMKQIHAYAITTSLARFTFISSKLLAFCALSPHADLRHAHTLFSAIPFPTLFHYNTVIAAFSRHSSSLFLRMLNDTVRPNARTLTLLLSKASPSLSFLHQLHSLTLRLGHLADSYVTTSLVAAYSNHSRTSAARHVFDESPHPNVACCTSLLTGYCNNGLLNDAREVFDAMPDKNDVSYSAMVSGYVRNGFSREAIELFRDLRKNCFATVKPNNSLLVSVLGACAAVGAFEEGKWIHSYVHRSGELEYHEVELGTALIDFYAKCGCVEPAERLFGKMKSRDVAAWSAMILGMAMNGKNGGALEVFEEMEKVGPRPNGVTFIGVLAACNDRELCGRAVGLLECMREKYGIAAWIEHYGCVVDVLARAGKIEEALEVMKGMKMEADGAMWGCLVNGCLMHGYVELGHRIGRYLVEFESGHSGRYVVLSELYARMGRWEAVLDTRNLMKQRAVTPVTASSFIEIRQF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0065 485 Gene3D Tetratricopeptide repeat domain 276 442 IPR011990 GO:0005515
Pvu11g0065 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Pvu11g0065 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Pvu11g0065 485 Pfam PPR repeat 376 402 IPR002885 -
Pvu11g0065 485 Pfam PPR repeat 198 226 IPR002885 -
Pvu11g0065 485 Pfam Pentatricopeptide repeat domain 302 350 IPR002885 -
Pvu11g0065 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Pvu11g0065 485 Gene3D Tetratricopeptide repeat domain 120 256 IPR011990 GO:0005515
Pvu11g0065 485 Gene3D Tetratricopeptide repeat domain 6 113 IPR011990 GO:0005515
Pvu11g0065 485 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 484 - -
Pvu11g0065 485 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 484 - -
Pvu11g0065 485 TIGRFAM PPR: pentatricopeptide repeat domain 198 227 IPR002885 -
Pvu11g0065 485 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
Pvu11g0065 485 TIGRFAM PPR: pentatricopeptide repeat domain 377 401 IPR002885 -
Pvu11g0065 485 Pfam PPR repeat 163 192 IPR002885 -
Pvu11g0065 485 Pfam E motif 421 471 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0065 Pvu-Chr11 472340 474042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0065 121 482 Glycoside Hydrolase AT3G49170 30.245 6.26e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0065 - - gmx:106795222 654.44