Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0050 ATGATAAGCATGCTAGTAAGGTTCCCTCCTAATGCCATGAGCTTGTGCTCCCGGAAGAAGAATAAGAACAAAAACAAAACTTGGAAAGAAAGATGCTTGGAAAGACAAGAAAGAAGAAACGTTCTTCGTTTCCCCAAACCCAAATCAACCCCACTCCTTATCCATCGCCGACCTCCTCCCCAAACCCAATCGGAAGCACTTGAACAAGTCATCACAGACCTTGAAGACTCTCTTGAGAAGGGCATCAGAATCGACCCTGAAATATATGCCTCTTTATTAGAAATCTGCTATCGCTTGCAAGCCATTCGTCCCGGTATCAGACTCCACCGCCTTATCCCAACATCCCTCTTGCATAGAAATTTTGGCATCTCTTCCAAGCTTCTCAGGTTGTATGCTGCATGTGGGCTTGTGGATGACGCCCACGAGCTGTTTGATCAAATGGCTAAGAGGGACACGTCTGCATTTCCCTGGAATTCACTCATCTCAGGATATGCCCAAATGGGCCTCTACGACGATGCCATTGCACTCTACTTCCAAATGGTGGAAGAGGGTGTTGAACCTGACTTGTTCACTTTCCCGAGGGTTCTCAAAGTTTGCGCGGGAATTGGGTCTGTTCGAGTGGGGGAAGAAGTGCATCGCCATTTGGTTCGTGCTGGATTTGCCACTGATGGGTTTGTCCTTAACGCACTTGTTGACATGTATTCTAAGTGCGGTGACATCGTAAAGGCTCAAAAGATCTTTGACAAGATGCCTCATAGAGACTCCATTTCGTGGAATTCCATGCTCACTGCTTATGTTCATCATGGTCTTGAGGTTGGGGCAGTGAACATTTTCCGCCAAATGATTTTGGACGGGTGTGAACCTGATTCTGTTAGCGTATCCACCATTCTTACAGGTGTGTCATCACCATGTCTAGGCGTCCAAATTCATGGATGGGTAATTCGGCGAGGTCTTGACTGGAACCTGTCCATTGCTAATTCCTTGATGGTGATGTACTCCAGTCATGGTAGGTTAGAAAAGGCACGTTGGATATTCAATCTAATGCCAGAGAGGGATGTTGTTTCGTGGAATTCTATAATATCTGCACATTGCAAACGCCGAGAAGCCCTTGAGTTTTTTGAGCAAATGGAGGAAGCTGGTGTTGAGCCTGATAAAATAACGTTTGTTTCAGTATTATCAGCCTGTGCCTACTTAGGCTTGGTGAAGGAGGGAGAGAGAGTGTTTGCTCTAATGTCTGCAAAACATAAAATAAAACCAATTATGGAACATTATGGTTGTATGGTTAACCTTTATGGAAGAGCCGGGCTAATTAAAAAGGCTTATAGCATCATAGTGGATGGAATGGGCTCTGAGGCTGCTGGTCCAACTCTTTGGGGAGCTTTATTGTATGCTTGCTTTTTGCATGGAGATGCAACTATTGGGGAGATTGCTGCAAACAGGCTCTTTGATTTGGAGCCAGACAACGAGCATAACTTTGTACTTCTTATGGGGATTTATGAAAATGCAGGCAGATTAGAGGACATGGAGAGAGTTAGAATGATGATGGTTGACAGAGGATTGGACTATTAG 1569 0.4493 MISMLVRFPPNAMSLCSRKKNKNKNKTWKERCLERQERRNVLRFPKPKSTPLLIHRRPPPQTQSEALEQVITDLEDSLEKGIRIDPEIYASLLEICYRLQAIRPGIRLHRLIPTSLLHRNFGISSKLLRLYAACGLVDDAHELFDQMAKRDTSAFPWNSLISGYAQMGLYDDAIALYFQMVEEGVEPDLFTFPRVLKVCAGIGSVRVGEEVHRHLVRAGFATDGFVLNALVDMYSKCGDIVKAQKIFDKMPHRDSISWNSMLTAYVHHGLEVGAVNIFRQMILDGCEPDSVSVSTILTGVSSPCLGVQIHGWVIRRGLDWNLSIANSLMVMYSSHGRLEKARWIFNLMPERDVVSWNSIISAHCKRREALEFFEQMEEAGVEPDKITFVSVLSACAYLGLVKEGERVFALMSAKHKIKPIMEHYGCMVNLYGRAGLIKKAYSIIVDGMGSEAAGPTLWGALLYACFLHGDATIGEIAANRLFDLEPDNEHNFVLLMGIYENAGRLEDMERVRMMMVDRGLDY* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0050 522 Pfam PPR repeat family 351 396 IPR002885 -
Pvu11g0050 522 Pfam PPR repeat family 157 199 IPR002885 -
Pvu11g0050 522 Pfam PPR repeat family 254 300 IPR002885 -
Pvu11g0050 522 PANTHER OS01G0913400 PROTEIN-RELATED 29 521 - -
Pvu11g0050 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 253 IPR002885 -
Pvu11g0050 522 TIGRFAM PPR: pentatricopeptide repeat domain 354 384 IPR002885 -
Pvu11g0050 522 TIGRFAM PPR: pentatricopeptide repeat domain 157 188 IPR002885 -
Pvu11g0050 522 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Pvu11g0050 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Pvu11g0050 522 PANTHER - 29 521 - -
Pvu11g0050 522 Pfam PPR repeat 423 443 IPR002885 -
Pvu11g0050 522 Pfam PPR repeat 227 252 IPR002885 -
Pvu11g0050 522 Pfam PPR repeat 127 150 IPR002885 -
Pvu11g0050 522 Pfam E motif 468 519 IPR046848 -
Pvu11g0050 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Pvu11g0050 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Pvu11g0050 522 Gene3D Tetratricopeptide repeat domain 303 402 IPR011990 GO:0005515
Pvu11g0050 522 Gene3D Tetratricopeptide repeat domain 207 302 IPR011990 GO:0005515
Pvu11g0050 522 Gene3D Tetratricopeptide repeat domain 403 521 IPR011990 GO:0005515
Pvu11g0050 522 Gene3D Tetratricopeptide repeat domain 62 206 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0050 Pvu-Chr11 370041 371993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0050 76 520 Glycoside Hydrolase AT3G49170 33.772 2.82e-77 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0050 - - gmx:112997711 900.582