Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0023 ATGGCCCAAAATGATTCAAACCCTCCTCCTCCTGCTCCGGCCGCTTCACCGCCGCAGGACCCTCCGTCACTGTCATCGGAGAATGATGCCAAAGCCGACGATGTGGTTGTGGAGAAGGTGAAGGCTGAGGAGGTGCTTGTGGATGAAGAGAAAGGCAAAGAGAAAGAGGAAGTAAAAGGTAGTGAGGAGGCGGTTGTGGTCGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAAGAAGAGGTTACAGGCGGAGAGACAGAGAGCGAGTCATTGAAGGAGGAGAGCAATAGGGTTTCTGATTCGGAGAGAAAGGGCATCGAAGAGCTGAAGAAGGCGCTGAGGGAAGAGTTGGAGCGGAAGGAGGAAGGCGAGGTTTCCATCTGGGGCGTCCCTCTCTTGAAGGACCAGAGGACTGACGTCATTCTTCTCAAGTTTCTGAGAGCGCGCGACTTGAAGGTGAAGGATGCTCTTGTGATGATTCAGAACACTCTCCAATGGAGGAAGGACTTCGGCATCGAGAAGCTTCTGGAGGAAGATCTGGGAGAGGAGTTGGAGAAGGTGGTCTTCATGCACGGCCACGGAAGAGAGGGGCACCCCGTCTGTTACAACGTCTACGGAGAGTTCCAGAACAAGGAGCTCTACCAGAAGGCCTTCTCCACCGAGGAAAACCGAACCAAGTTTCTCCGATGGCGGATTCAGCTGCTGGAGCGCAGCATCAGGAACCTCGACTTCACTCCCGGAGGCATCAGCGCCATTTTCCAAATCAATGACCTCAAAAACTCCCCTGGCCCTGCCAAACGGGAACTTCGCCTTGCCACCAAACAAGCTCTGCAGTTGCTTCAGGACAACTATCCCGAGTTTGTTGCCAAACAGGTTTTCATCAATGTCCCTTGGTGGTATCTTGCATTCTATACCATGATCAATCCCTTCTTAACTCAGAGAACCAAAAGCAAGTTTATCTTTGCAGGACCATCCAAATCTCCAGACATTCTTTTCAAGTATATTTCTCCCGAGCAAGTGCCGGTGCAGTATGGTGGCCTCAGTGTAGATTTCTGTGACTGCAACCCCGATTTCACTACGTCTGATCCTGTCACCGAACTTTCTATAAAGCCAACCACTAAGCAAACTGTCGAAATTGCTATCTATGAGAAATGCATTATTGTTTGGGAGCTGCGGGTGGTGGGCTGGGAGGTTTCCTACAATGCTGAATTCAAGCCTGATGCTAAAGATGCATATACAGTTGTCATACAGAAGGCCACAAAGATGTCCCCCACCGATGAACCAGTGGTTTCCAATAGCTTCAAAGTTGGTGAACTGGGGAAATTGTTGCTCACCATAGATAATCCTACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCATGATCAAACCCTACTGTGATTGA 1437 0.4948 MAQNDSNPPPPAPAASPPQDPPSLSSENDAKADDVVVEKVKAEEVLVDEEKGKEKEEVKGSEEAVVVEEKEKEKEKEKEKEKEKEKEKEEEVTGGETESESLKEESNRVSDSERKGIEELKKALREELERKEEGEVSIWGVPLLKDQRTDVILLKFLRARDLKVKDALVMIQNTLQWRKDFGIEKLLEEDLGEELEKVVFMHGHGREGHPVCYNVYGEFQNKELYQKAFSTEENRTKFLRWRIQLLERSIRNLDFTPGGISAIFQINDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFIFAGPSKSPDILFKYISPEQVPVQYGGLSVDFCDCNPDFTTSDPVTELSIKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYNAEFKPDAKDAYTVVIQKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTLKKKRLLYRFMIKPYCD* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0023 478 Pfam CRAL/TRIO, N-terminal domain 118 173 IPR011074 -
Pvu11g0023 478 SMART CRAL_TRIO_N_2 149 174 IPR011074 -
Pvu11g0023 478 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g0023 478 Pfam CRAL/TRIO domain 197 357 IPR001251 -
Pvu11g0023 478 PANTHER PATELLIN-1 27 478 IPR044834 GO:0008289
Pvu11g0023 478 CDD SEC14 197 358 IPR001251 -
Pvu11g0023 478 ProSiteProfiles GOLD domain profile. 363 473 IPR009038 -
Pvu11g0023 478 MobiDBLite consensus disorder prediction 1 114 - -
Pvu11g0023 478 Gene3D - 102 392 IPR036865 -
Pvu11g0023 478 SUPERFAMILY CRAL/TRIO domain 198 368 IPR036865 -
Pvu11g0023 478 PANTHER PATELLIN-3 27 478 - -
Pvu11g0023 478 MobiDBLite consensus disorder prediction 31 114 - -
Pvu11g0023 478 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 188 357 IPR001251 -
Pvu11g0023 478 SUPERFAMILY CRAL/TRIO N-terminal domain 97 190 IPR036273 -
Pvu11g0023 478 Coils Coil 58 93 - -
Pvu11g0023 478 Coils Coil 114 137 - -
Pvu11g0023 478 SMART sec14_4 193 360 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0023 Pvu-Chr11 175843 178222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0023 153 352 Acyl Lipid Metabolism Gene Families AT1G55840 28.436 4.81e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0023 - - gmx:100804006 657.907