Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0016 ATGAGATCTTGGGCAGAGGAGAGAGAAGAGAAGGGAGAGGAGATGGAGGACATTGAAGATTTGCTGGTCGGAAGCGGAAGCGCAACTGCGCCGGGCTTCCGTTTGCCAATGGCGGCAGCTGTTGGTGTTGGCGTTGGGAGCAAGCGGAATAAACTCTCCTCTTCGCCTTCTCCGGCAATCCCCGGCACTCAGACTATCTACATAAAGACCTTTGGCTGCTCTCACAACCAGAGTGACAGTGAATATATGGCTGGCCAGCTTTCGGCTTTTGGCTATTCGTTGAGTGACAATCCAGAGCAAGCAGATCTCTGGCTCATTAACACTTGCACAGTGAAATCCCCCAGTCAATCTGCCATGGATACCATCATAACAAAAGGAAAATCTTCTAATAAACCGCTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGGTATTTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATTGATCGTGTTGTTGAAATTGTAGAGGAGACTTTAAAAGGTCACGAAGTGCGCCTTTTGACCCGTAAGACATTGCCAGCACTTGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCCTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACAATCGATAGCCTTGTTGGGCGTGTAAAATCTGTCATTTCTGATGGAGTTAAAGAGATATGGCTTAGTAGTGAGGACACTGGAGCATACGGTCGTGACATTGGTGTCAATCTTCCAACTTTGTTGAAAGCCTTAGTGGCAGAACTACCTGCTGATGCAAGCACAATGCTACGTATTGGAATGACCAATCCACCTTATATCCTTGAACACTTGAAAGAGATAGCCGAGATTTTGCGGCACCCATGTGTATACTCTTTTCTCCATGTACCAGTTCAGTCTGGAAGTGATACTGTCTTGAGTGCAATGAATAGGGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCGGGTGAAACTGATGAAGATTTTGTGCAGACTGTCAATCTTGTTAAAGATTATAAGTTCTCTCAAGTTCACATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAAAGTGGTTAAGGGAAGAAGCCGAGAGCTGACAAATGTCTTTGAATCCTTCACACCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGACGTTGCATCTGATGGAATTCACTTGGTTGGTCATACGAAAGGATATATACAAGTTCTTGTACTTGCTCCCGACCATATGCTTGGAGCTTCAGCTATGGCTAAGATAACATCTGTGGGAAGGTGGTCTGTCTTTGGGGAAGTAATTGAGACAGTCAACCATGCAAGTGACAATAAAGCTCTAAACAAGTTGGTTCCTGACCGGGACTTGCATTCTCTCTGCGTTAACCCAGCCAAGGCTGGTGGATTCTCAGAAGAGCCAGAATCTTGTGCCTGTGGAAGTGACGTCTGTTGCAGTATCGACAAGAGTGATGTTTCAAGAGGCACTGCAGTGCCACAGAACCAAAGCAATAGAAATTTCTTTGAATGGATGCTAAGGAAGCGGGAGCATCTGCACAAAAAGGTTGAGAGCGAGCTTGCCTCGGGATCTGTTAAAAAGCAGGAAGGAAAGATGAAGAAGTGGGACTTCGTTGATAAGGTTCTTTTGGGTGGAATGTCTATCAGTATCTTTACTATAATTGCTCTAGTAGCAGCTCTTGCGTTCAGAGTGATTTGGTCCCAGTAA 1878 0.4505 MRSWAEEREEKGEEMEDIEDLLVGSGSATAPGFRLPMAAAVGVGVGSKRNKLSSSPSPAIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPEQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRYLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVAELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTVLSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFVQTVNLVKDYKFSQVHISQFYPRPGTPAARMKKVPSKVVKGRSRELTNVFESFTPYSGMEGKVERIWITDVASDGIHLVGHTKGYIQVLVLAPDHMLGASAMAKITSVGRWSVFGEVIETVNHASDNKALNKLVPDRDLHSLCVNPAKAGGFSEEPESCACGSDVCCSIDKSDVSRGTAVPQNQSNRNFFEWMLRKREHLHKKVESELASGSVKKQEGKMKKWDFVDKVLLGGMSISIFTIIALVAALAFRVIWSQ* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0016 625 ProSiteProfiles Radical SAM core domain profile. 193 426 IPR007197 GO:0003824|GO:0051536
Pvu11g0016 625 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 64 172 IPR013848 GO:0035596|GO:0051539
Pvu11g0016 625 SMART MiaB 197 421 IPR006638 GO:0003824|GO:0051536
Pvu11g0016 625 Coils Coil 1 21 - -
Pvu11g0016 625 Pfam Uncharacterized protein family UPF0004 66 143 IPR013848 GO:0035596|GO:0051539
Pvu11g0016 625 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 66 487 IPR006466 GO:0035598|GO:0035600
Pvu11g0016 625 PANTHER RADICAL SAM PROTEINS 15 520 - -
Pvu11g0016 625 Pfam Radical SAM superfamily 204 376 IPR007197 GO:0003824|GO:0051536
Pvu11g0016 625 Gene3D tm_1862 like domain 195 425 IPR023404 -
Pvu11g0016 625 ProSiteProfiles TRAM domain profile. 426 488 IPR002792 -
Pvu11g0016 625 Gene3D - 65 184 IPR038135 -
Pvu11g0016 625 CDD Radical_SAM 201 406 - -
Pvu11g0016 625 SFLD Radical SAM 164 406 IPR007197 GO:0003824|GO:0051536
Pvu11g0016 625 ProSitePatterns Methylthiotransferase radical SAM domain signature. 201 221 IPR020612 GO:0051539
Pvu11g0016 625 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 65 482 IPR005839 GO:0006400|GO:0016740|GO:0051539
Pvu11g0016 625 SUPERFAMILY Radical SAM enzymes 187 421 - -
Pvu11g0016 625 SFLD B12-binding domain containing 164 406 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0016 K15865 - gmx:100798865 1077.77