Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0014 ATGCCCCAATTTGTAAATTTTCGGCTTTTCCCGCGCTTCCACGCACTCAAAACCCTTCCTTTCTCCACCCACCGAATGGGCATGGCCGATACCCTCTGTACCCATCTCCACCAAAGCAATGGCGGCGTTGAGAACTCATTGTCCAAGGTTAAGCCTAAACTCGACTCTCGGTGTGTGATCCAAGTTCTCAACTCCTGTCATCCCAAGCAACTTCTTTTGGGTGTCAGATTCTTCGTTTGGGCTGGATTTCAATCTGGCTACAGGCACAGTGCTTACACCTACAGCAAAGCTTGCAAATTGCTAGGGATTCAACAAAATCCCCAAATTATTCGTGATGTCGTTCTGTCTTACGAGGCTGAAGGGTGTTCAGTCACTGTCAACATGTTCAGGGAGGTTCTGAAGCTGTGCAAAGAAGCTCAGCTAGCAGACGTGGCATTGTGGGTGTTGAGGAAGATGGAGCAGAGTTTCAACATCCGTGCTGACACTGTGATGTATAATGTGGTTATTAGGCTGTGTTGCAAGAATGGCGACATTGAAACGGCTGAGAAGTTGACCGGGGAGATGAGTTTGAATGGTCTTTATCCTGATCTTATTACGTACATGGCAATAGTGGAGGGATTCTGTAATGCTGGTCGACCTGAGCATGCTTATTCTGTTCTTAAGGTTATGAGAGTACATAAATGTTCACCCAATTTGGTGCTTTTATCAGCCATTTTAGACGGCTTGTGTAGGTCTGGATCTATGGAAATGGCATTGGAGTTGTTGGATGAAATGGAGAAAGGTGGGGATTGTAGTCCAAATGTTGTTACTTATACATCTGTGATTCAAAGTTTCTGTAAGAGAGGTCAGTGGGTGGAAGCATTGGATATTCTGGATAGAATGAAAGCTTTGGGGTGCCATGCAAATCATGTTACTGTTTTTACTTTGGTTGATAGACTTTGTGTTGAGGGTCGTGTAGGAGAAGCTTACAAGTTGATTGATAAGTTTGTGGTGGAACACGGTGTTTCTTATGGTAATTGTTGCAGTTCACTTGTGATTTCTTTGATAAGGATTAAAAAGCTGGACGAAGCAGAGAAGCTCTTCATGGAAATGCTTTCTGGTGATGTCAGACCTGATAGTTTGGCATCTAGCCTTTTGCTGAAGGAGCTCTGTATGAAGGACCAGGTATTGGATGGATTCCACTTGCTTGAAGCAATGGAGAATAAGGGATGTTTGTCTACCATTGACAATGGTATTTATTCTATTCTTTTAGTTGGCCTTTGTCAAAGAAACCACCTGACGGAGGCCACAAAGTTGGCCAAGATAATGCTTAAGAAATCAGTTCCACTGCAACCTCCGTACAAAGATGGTGCAATCGATATCCTTATAAAATCTGGAGAAAAAGATCTTGTAAACCAGTTGACTTGCATTCGTAAGGGGCTTTGA 1425 0.4351 MPQFVNFRLFPRFHALKTLPFSTHRMGMADTLCTHLHQSNGGVENSLSKVKPKLDSRCVIQVLNSCHPKQLLLGVRFFVWAGFQSGYRHSAYTYSKACKLLGIQQNPQIIRDVVLSYEAEGCSVTVNMFREVLKLCKEAQLADVALWVLRKMEQSFNIRADTVMYNVVIRLCCKNGDIETAEKLTGEMSLNGLYPDLITYMAIVEGFCNAGRPEHAYSVLKVMRVHKCSPNLVLLSAILDGLCRSGSMEMALELLDEMEKGGDCSPNVVTYTSVIQSFCKRGQWVEALDILDRMKALGCHANHVTVFTLVDRLCVEGRVGEAYKLIDKFVVEHGVSYGNCCSSLVISLIRIKKLDEAEKLFMEMLSGDVRPDSLASSLLLKELCMKDQVLDGFHLLEAMENKGCLSTIDNGIYSILLVGLCQRNHLTEATKLAKIMLKKSVPLQPPYKDGAIDILIKSGEKDLVNQLTCIRKGL* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0014 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Pvu11g0014 474 Gene3D Tetratricopeptide repeat domain 332 471 IPR011990 GO:0005515
Pvu11g0014 474 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 468 - -
Pvu11g0014 474 Gene3D Tetratricopeptide repeat domain 190 259 IPR011990 GO:0005515
Pvu11g0014 474 Gene3D Tetratricopeptide repeat domain 260 331 IPR011990 GO:0005515
Pvu11g0014 474 Gene3D Tetratricopeptide repeat domain 32 189 IPR011990 GO:0005515
Pvu11g0014 474 Pfam PPR repeat 412 440 IPR002885 -
Pvu11g0014 474 Pfam PPR repeat 341 366 IPR002885 -
Pvu11g0014 474 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 21 468 - -
Pvu11g0014 474 Pfam PPR repeat family 161 209 IPR002885 -
Pvu11g0014 474 Pfam PPR repeat family 230 280 IPR002885 -
Pvu11g0014 474 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Pvu11g0014 474 TIGRFAM PPR: pentatricopeptide repeat domain 236 268 IPR002885 -
Pvu11g0014 474 TIGRFAM PPR: pentatricopeptide repeat domain 198 231 IPR002885 -
Pvu11g0014 474 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Pvu11g0014 474 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Pvu11g0014 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Pvu11g0014 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Pvu11g0014 474 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0014 134 445 Glycosyltransferase AT1G05670 24.713 2.94e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0014 - - ccaj:109798432 764.992