Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0007 ATGCGCGTGGGTGTTGGAGTGAGAGGTGTGGTGAGAGGAAGAGGGAGCGATGGGCGTTGGATTGTTGAGAGTGAGACACATGGAACGGCGAAGGGGAATGGCAGTGACTGGAATTCCCTTCTTCGCATGCACTCCAACCATGGATTGCCCCAAATGGTCCTTGGATGTTTTGCTTCTTTCTTCAACTCCGGGCATTCCCCTGACCAGTTCACTTTCGCCATCACTCTCTCCGCCTGTGCAAAGCTCCAGAATGTTGAGATGGGGAGGGCAGTTCACTGTTGCGTAATTAAGAGGGGTCTTCAATCTGCCTCCTTCTGTCATGGCGCACTCATCCATCTCTACGCCAATTCCCACTCTCTCACTTCTGCTCGCACCCTATTTGACGCCTCTCCCTCTCCTCACCTCCACCCTGTTTCTTGGACCGCTTTAATCTCTGCTTATGTTCAAGCCGGCTTGCCTCGTCAGGCACTCCACATATTTGACAAAATGCGCACCACTGCTTCTCCCGCTTCTTTTCCAATTCCTGACCCTGTGGCACTTGTCACCGTCTTAAACACTTACACCTCTTTAGGAATGCTGGACGATGCGTGCCAATTGTTTTCGCAGATGCCCTTCTCCACCCGCAATGTTGTGGCCTGGAATGTCATGATTTCTGGTCATGCCAAGAGAGGCCACTATCAGGAGGCTCTTGCCTTCTTTCATCAAATGACTAAGCATGGTGTCAAATCCTCGAGATCCACACTCGCAAGTGTTTTAAGTGCAATTGCCAGCTTAGCCGCCCTCCATCACGGCTTCCTAGTTCATGCCCTGGCTATCAAGCAAGGTTTCGACTCCAGTATATACGTTGCAAGTTCTTTGATCAATATGTATGGCAAGTGTGCGATGCTGGATGCTGCACGGCAAGTATTTGATGCTATATCTCATAAAAATATGATTGTCTGGAACACCATGCTCGGAGTTTATTCACAGAATGGCTATTTAAGTAATGTCATGGAGTTGTTCTCGGATATGACAATATGTGGCGTTCACATGGATGAATTTACCTACACCAGCATTTTGAGCTCATGTGCATCCTTTGAATACCTAGGAATTGGTCGCCAGTTGCATTCAACTATTATCAAGAAAAGATTTACCTCTAATTTATTTGTCAACAATGCATTGATAGATATGTATGCCAAGGCTGGGGCTTTGGCGGAAGCCACTAAGCAGTTTGAGCTCATGACATACCGAGATCATATTTCCTGGAATGCCATTATTGTTGGATATGTGCAAGAAGAAGAGGAGGCTGGTGCTTTCAGTTTTTTTCAGAGAATGAATTTAGAAGGCTTTGTACCTGATGAGGTATCCTTGGCCAGCATACTCAGTGCATGTGGAAGTATTAAGGTGCTACAAGTAGGACAGCAGCTCCATTGCCTGTTAGTTAAGTTGGGTTTAGAAACAAACCTTTTTGCTGGAAGTTCTCTTATTGACATGTATTCAAAGTGCGGAGACATTGAAGATGCACGTAAAATTTATTCTGGCATGCCTGAACGGAGTGTAGTCTCCTTTAATGCTCTGATTGCAGGATATGCTCCAAAAGACACAAAAGTAGCTATTAGTCTTCTTCATGAGATGCAGATACTGGGATTGAACCCATCTGAGATTACATTTGTAAGCCTCTTAGATGTTTGTAAGGGTTCTGCCAAGGTAATTTTAGGCATGCAGATCCATTGTGTTATAGTGAAGAGGGGTCTCTTATGTGGTAGCGAATTCTTGGGAACGTCTTTGTTAGGCATGTATACGGACTCACAAAGGCTCGCAGATGCAAGCATTCTTTTCTCGGAGTTTTCTAACCTTAAAAGCATTGTAATGTGGACCGCTTTAATTTCAGGACATACTCAAAATGAATGCAGTGATGTTGCCTTAGACTTGTATCAAGAAATGCGTGGCAACGATATCTTACCAGACCAAGCAACTTTTGTTACTGTTCTTCGAGCTTCTGCTCTCTTATCCTCATTGCGTGATGGTAGAGAGATACATTCTCTAATCTTCCATACTGGTTTTGACTTAGATGAGTTAACCGGCAGTGCCCTTGTAGACATGTATGCAAAATGTGGTGATGTAAAAAGTGCTGTTCAAGTTTTTGAGGAATTGGCTATTAAAAAGGATGTGATTTCTTGGAACTCAATGATAGTTGGATTTGCCAAAAATGGTTATGTAGAAAGCGCCCTGAAGGTCTTTAATGAGATGGCTCAATCATGCATTACCCCTGATGATGTCACATTCCTTGGAGTGCTTACTGCATGTAGCCACGCAGGGTGGGTTTATGAGGGTCGTCAAATTTTTTACATCATGGTAAACTATTATGGAATTGAGCCCAGAGTGGATCACTACGCTTGCATGGTTGATCTCCTAGGTAGGTGGGGTTTTCTCAAGGAAGCTGAAGAGTTCATTGACAAACTAGAAGTTGAACCCAATGCTATGATTTGGGCCAATTTCTTGGGTGCTTGCAGAATACATGGGGATGAAAAGAGGGGACAGAGAGCGGCTGAGAAACTTATCGAGTTAGAGCCCAGAAATTCTTCTCCGTATGTACTGCTTTCAAATATGTATGCTGCATCAGGACTTTGGGATGAAGCTAGATCTTTGAGGAGAACAATGATACAGAAAGATATAAAAAAAATGCCTGGCTGTAGCTGGATCGTAGTGGAACAAAAGACAAACCTATTTGTTGCGGGTGATATGTCACATCCTAGTTGTGATGAAATTTCACTAGCATTGAAGCATCTGACAGCACTAATTAAAGACAATAGATTCCAGGATGGTGGAATTTCCAGGCTCAGTTAA 2826 0.4395 MRVGVGVRGVVRGRGSDGRWIVESETHGTAKGNGSDWNSLLRMHSNHGLPQMVLGCFASFFNSGHSPDQFTFAITLSACAKLQNVEMGRAVHCCVIKRGLQSASFCHGALIHLYANSHSLTSARTLFDASPSPHLHPVSWTALISAYVQAGLPRQALHIFDKMRTTASPASFPIPDPVALVTVLNTYTSLGMLDDACQLFSQMPFSTRNVVAWNVMISGHAKRGHYQEALAFFHQMTKHGVKSSRSTLASVLSAIASLAALHHGFLVHALAIKQGFDSSIYVASSLINMYGKCAMLDAARQVFDAISHKNMIVWNTMLGVYSQNGYLSNVMELFSDMTICGVHMDEFTYTSILSSCASFEYLGIGRQLHSTIIKKRFTSNLFVNNALIDMYAKAGALAEATKQFELMTYRDHISWNAIIVGYVQEEEEAGAFSFFQRMNLEGFVPDEVSLASILSACGSIKVLQVGQQLHCLLVKLGLETNLFAGSSLIDMYSKCGDIEDARKIYSGMPERSVVSFNALIAGYAPKDTKVAISLLHEMQILGLNPSEITFVSLLDVCKGSAKVILGMQIHCVIVKRGLLCGSEFLGTSLLGMYTDSQRLADASILFSEFSNLKSIVMWTALISGHTQNECSDVALDLYQEMRGNDILPDQATFVTVLRASALLSSLRDGREIHSLIFHTGFDLDELTGSALVDMYAKCGDVKSAVQVFEELAIKKDVISWNSMIVGFAKNGYVESALKVFNEMAQSCITPDDVTFLGVLTACSHAGWVYEGRQIFYIMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANFLGACRIHGDEKRGQRAAEKLIELEPRNSSPYVLLSNMYAASGLWDEARSLRRTMIQKDIKKMPGCSWIVVEQKTNLFVAGDMSHPSCDEISLALKHLTALIKDNRFQDGGISRLS* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Pvu11g0007 941 TIGRFAM PPR: pentatricopeptide repeat domain 487 514 IPR002885 -
Pvu11g0007 941 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Pvu11g0007 941 TIGRFAM PPR: pentatricopeptide repeat domain 211 242 IPR002885 -
Pvu11g0007 941 TIGRFAM PPR: pentatricopeptide repeat domain 413 447 IPR002885 -
Pvu11g0007 941 TIGRFAM PPR: pentatricopeptide repeat domain 718 751 IPR002885 -
Pvu11g0007 941 TIGRFAM PPR: pentatricopeptide repeat domain 138 164 IPR002885 -
Pvu11g0007 941 TIGRFAM PPR: pentatricopeptide repeat domain 616 649 IPR002885 -
Pvu11g0007 941 Gene3D Tetratricopeptide repeat domain 28 170 IPR011990 GO:0005515
Pvu11g0007 941 Pfam PPR repeat 138 164 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat 791 815 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat 413 443 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat 182 203 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat 385 408 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat 486 512 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat 689 711 IPR002885 -
Pvu11g0007 941 PANTHER OSJNBB0070J16.5 PROTEIN 510 581 - -
Pvu11g0007 941 PANTHER OSJNBB0070J16.5 PROTEIN 34 410 - -
Pvu11g0007 941 PANTHER OSJNBB0070J16.5 PROTEIN 584 676 - -
Pvu11g0007 941 PANTHER OSJNBB0070J16.5 PROTEIN 680 933 - -
Pvu11g0007 941 PANTHER OSJNBB0070J16.5 PROTEIN 408 511 - -
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat family 613 659 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat family 309 357 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat family 715 763 IPR002885 -
Pvu11g0007 941 Pfam PPR repeat family 208 255 IPR002885 -
Pvu11g0007 941 Pfam E motif 833 894 IPR046848 -
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Pvu11g0007 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 853 887 IPR002885 -
Pvu11g0007 941 Gene3D Tetratricopeptide repeat domain 171 260 IPR011990 GO:0005515
Pvu11g0007 941 Gene3D Tetratricopeptide repeat domain 665 781 IPR011990 GO:0005515
Pvu11g0007 941 SUPERFAMILY TPR-like 175 881 IPR011990 GO:0005515
Pvu11g0007 941 Gene3D Tetratricopeptide repeat domain 261 363 IPR011990 GO:0005515
Pvu11g0007 941 Gene3D Tetratricopeptide repeat domain 364 465 IPR011990 GO:0005515
Pvu11g0007 941 Gene3D Tetratricopeptide repeat domain 565 664 IPR011990 GO:0005515
Pvu11g0007 941 Gene3D Tetratricopeptide repeat domain 466 564 IPR011990 GO:0005515
Pvu11g0007 941 PANTHER OS07G0578800 PROTEIN-RELATED 510 581 IPR045215 GO:0003723|GO:0009451
Pvu11g0007 941 PANTHER OS07G0578800 PROTEIN-RELATED 34 410 IPR045215 GO:0003723|GO:0009451
Pvu11g0007 941 PANTHER OS07G0578800 PROTEIN-RELATED 680 933 IPR045215 GO:0003723|GO:0009451
Pvu11g0007 941 PANTHER OS07G0578800 PROTEIN-RELATED 408 511 IPR045215 GO:0003723|GO:0009451
Pvu11g0007 941 PANTHER OS07G0578800 PROTEIN-RELATED 584 676 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0007 Pvu-Chr11 45247 48072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0007 201 928 Glycoside Hydrolase AT3G49170 33.333 4.72e-134 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0007 - - gmx:100800995 1461.05