Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1718 ATGGATACAAGCCAGAAGGGAGCCCTCATGACCAATGAAAGCACTCAAGATTTATCAGTTATGGTTCTGAAACAGCAGCAGTACAAGAAGAAGCAACCTAAGCCAGAGGAGACACATAATCAATCCCATTGTGTTATCTGTAGGGGGGGAAACAGTTGCCAAACAGTTCTTTCAAGAACAAAACTGATGAATACTTTGATTGGAAAAGGGAAACCACACGAAGCTCAGACAGTCTTCAACAATTTGACTGAAGAAGGGCATAAGCCTACTCTCATAACATACACAACTCTTGTGGCTGCTCTAACCCGCCAAAAGCGTTTGAAGTCAATTCCTGCAGTTCTTGCTAAAGTTGCAGACAATGGGATGAAGCCTGATTCAATACTTATCAATGCCATGATCAATGCGTTTTCTGATTCTGGCAAGGTAGATGAAGCCATGAAAATATTTAAGAAAATGAAGGAGTATGGATGTAAACCAACAACCAGTACTTATAATACCCTCATTAAAGGGTTTGGCATTGCTGGAAGGCCTTATGAGGCTATGAAATTGTCAGAGATTATGGGTCAGGATCAAAATGTGAAACCCAATGATAGAACATATAACATTCTCATTCAAGCCTGGTGTACCAAGAACAAACTGGAAGAAGCATGGAATGTTATGCATAAAATGGTGGCTTCTGGTATTCAGCCAGATGTGGTCACATATAACACGATGGCAAGGGCATATGCTCAGATTGGTGAAACAGAGAAAGCTGAAAGATTAATATTGAAAATGCAGTACAACAAAGTAAAACCCAATGAACGAACTTGTGGTATCATAATAAGTGGTTACTGCAAGGAAGGCAATATGACAGAAGCCTTGAGGTTTCTATACATAAAAATGAAGGAGCTTGGTGTGCATCCAAATCCAGTAGTTTTCAACTCCCTTATCAAAGGATATCTAGACATTAAAGACACAGATGGAGTAGATGAGGCACTGGCATTGATGGAAGAATTTGGGATCAAACCAGATGTGGTGACATTTAGCACAATCATGAATGCATGGAGTTCTGCAGGGCTTATGGATAATTGTGAGGAGATATTCAATAACATGGTGAAGGCCGATATAGAACCTGACATCCACGCATATAGCATCCTTGCAAAAGGATATGCACGTGCTGGACAGTCACAAAAAGCTGAGGCTCTTCTCACTTCCATGACCAAATATGGTGTACAACCAAATGTGGTGATCCTCACTACCATCATCAGTGGATGGTGTGCAGAAGGAAAAATGGATCGTGCCATTAGACTTTATGAGAAAATGCACGATGTGGGAATTCCCCCAAATTTAAAAACTTATGAAACCTTAATATGGGGATATGGAGAAGCAAAACTACCATGGAAAGCAGAAGAGTTACTTACAACTATGGAAGAGAGGGGTGTTGCCCCTGAAACATCCACTGTGCAACTGGTTGCTGATGCTTGGCGTTCCATTGGTTTACTCAAAGAAGCCAACAGAATTCTAAATGATTCAGAAGAAGAGGAAAGTGAGTTAGATAAAAAATTTGATAGTGACAATATTTATACGAGACAGAAATTCAGTGCATCTCACTCTAATATGCTTCAAATACCTGATGTAGTGGTACCTCATCCAGAAAGAACAACTAATGGCAACATAAGAAGCCAAAGGGTTGTCAAAGTATCTGACAACATGCGACATATTACCACTTCCATGTTTTTGGTTCGTACAACAAATTCATATGGAGTACAAGCACATAGTGTAAGTAAACAGCAGATTCAAAATCAGGTTGTTAGGCCATTCCTTGACTATTGCAGAGTAGTGTCAATACTTTGTTGA 1836 0.3992 MDTSQKGALMTNESTQDLSVMVLKQQQYKKKQPKPEETHNQSHCVICRGGNSCQTVLSRTKLMNTLIGKGKPHEAQTVFNNLTEEGHKPTLITYTTLVAALTRQKRLKSIPAVLAKVADNGMKPDSILINAMINAFSDSGKVDEAMKIFKKMKEYGCKPTTSTYNTLIKGFGIAGRPYEAMKLSEIMGQDQNVKPNDRTYNILIQAWCTKNKLEEAWNVMHKMVASGIQPDVVTYNTMARAYAQIGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYIKMKELGVHPNPVVFNSLIKGYLDIKDTDGVDEALALMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNNMVKADIEPDIHAYSILAKGYARAGQSQKAEALLTSMTKYGVQPNVVILTTIISGWCAEGKMDRAIRLYEKMHDVGIPPNLKTYETLIWGYGEAKLPWKAEELLTTMEERGVAPETSTVQLVADAWRSIGLLKEANRILNDSEEEESELDKKFDSDNIYTRQKFSASHSNMLQIPDVVVPHPERTTNGNIRSQRVVKVSDNMRHITTSMFLVRTTNSYGVQAHSVSKQQIQNQVVRPFLDYCRVVSILC* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Pvu10g1718 611 Gene3D Tetratricopeptide repeat domain 290 401 IPR011990 GO:0005515
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Pvu10g1718 611 SUPERFAMILY HCP-like 134 470 - -
Pvu10g1718 611 Pfam PPR repeat family 124 171 IPR002885 -
Pvu10g1718 611 Pfam PPR repeat family 195 243 IPR002885 -
Pvu10g1718 611 Pfam PPR repeat family 269 313 IPR002885 -
Pvu10g1718 611 Pfam PPR repeat family 336 385 IPR002885 -
Pvu10g1718 611 Pfam PPR repeat family 406 453 IPR002885 -
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 301 IPR002885 -
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Pvu10g1718 611 PANTHER OS01G0228400 PROTEIN 3 608 - -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 233 267 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 410 442 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 339 373 IPR002885 -
Pvu10g1718 611 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Pvu10g1718 611 Coils Coil 494 514 - -
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Pvu10g1718 611 Gene3D Tetratricopeptide repeat domain 23 173 IPR011990 GO:0005515
Pvu10g1718 611 Gene3D Tetratricopeptide repeat domain 402 517 IPR011990 GO:0005515
Pvu10g1718 611 Gene3D Tetratricopeptide repeat domain 174 289 IPR011990 GO:0005515
Pvu10g1718 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1718 53 525 Glycosyltransferase AT1G05670 27.557 1.80e-60 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1718 K17710 - gmx:100809945 1027.7