Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1702 ATGGCTCTTGCGGGAGTTGAAGTGAAGCATGTGGAGGCCGTGCCGGAGGAGAATTGCTCCGCCAAGCCCACCAAGCAGGGCGAGGGTCTCCGCCACTACTATTCTCTCAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCTCAGCGTAACGAGCTCAATTCCAGGGTGAGGATGCTACGCGAAGAGTTGCAGCTTCTACAGGAGCCTGGCTCCTATGTCGGTGAAGTTGTCAAAGTGATGGGCAAGAACAAAGTCCTTGTCAAGGTCCACCCAGAAGGAAAATACGTTGTCGACATTGACAAAAGTATTGACATTACAAAGATCACTCCATCCACTAGAGTTGCACTTCGCAATGATAGCTATGTTCTTCATTTAGTTCTGCCCAGTAAAGTTGATCCGTTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACCTATGACATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATCAAAGAGGTCATCGAGCTACCAATTAAGCATCCTGAGCTCTTTGAGAGTCTTGGAATTGCACAACCAAAGGGTGTCCTGCTGTATGGGCCACCTGGTACAGGAAAAACGTTGTTGGCTAGGGCAGTGGCTCATCATACTGACTGTACGTTCATAAGGGTGTCTGGTTCTGAATTGGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAGCTTTTCGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGACGAAATTGACAGCATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGACAGTGAGGTACAACGTACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACTAATAGGATTGATATCTTGGATCAAGCTCTCCTTAGACCTGGACGTATTGATAGGAAGATTGAATTTCCTAACCCCAATGAAGAGTCTCGGCTAGATATTTTGAAAATCCATTCAAGGAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGGCTGTATGCACTGAAGCTGGTATGTTTGCTTTGAGGGAAAGGAGAGTACACGTGACTCAGGAGGATTTCGAGATGGCTGTGGCGAAGGTGATGAAAAAGGAGACTGAAAAAAATATGTCATTGCGGAAGTTGTGGAAGTGA 1254 0.4545 MALAGVEVKHVEAVPEENCSAKPTKQGEGLRHYYSLNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1702 417 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
Pvu10g1702 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Pvu10g1702 417 Gene3D - 149 330 IPR027417 -
Pvu10g1702 417 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 23 414 - -
Pvu10g1702 417 Pfam ATPase family associated with various cellular activities (AAA) 196 329 IPR003959 GO:0005524|GO:0016887
Pvu10g1702 417 Coils Coil 38 72 - -
Pvu10g1702 417 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 42 402 IPR005937 GO:0005737|GO:0030163|GO:0036402
Pvu10g1702 417 Gene3D - 40 148 IPR012340 -
Pvu10g1702 417 SMART AAA_5 192 332 IPR003593 -
Pvu10g1702 417 Pfam Proteasomal ATPase OB C-terminal domain 83 138 IPR032501 -
Pvu10g1702 417 Gene3D - 335 412 - -
Pvu10g1702 417 CDD AAA 162 329 - -
Pvu10g1702 417 PANTHER BNAA02G04630D PROTEIN 23 414 IPR035261 GO:0036402
Pvu10g1702 417 Pfam AAA+ lid domain 353 395 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1702 Pvu-Chr10 43085610 43089749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1702 157 413 Miscellaneous Gene Families AT5G58870 40.541 1.54e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1702 K03066 - gmx:100776268 788.489