Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1628 ATGTTATCTTTGCCAACTCCCTTGTTCTTTTCACTTGCAACCTTCACACTTCCATTTTCTTGGTTCCCTAATAGAGTGATTTCTAACACTCTTGCTACTATGTGTTCTTCAAACTGCTTTGAAGAATCTCCAATATCTTTGCTTGAGAGGTGCAAGTCCATGTACCAGCTAAAGCAAATTCACTCCCACATCGTCAAAATTGGTCTCTCTTCATACCCTTTATTTCAAAATAGAGTCTTAGCCTTCTGTTGTGCTCATCAATCAGGGGATATGGACTATGCCCGTCAGGTGTTTGACACAATCACGCAGCCAACTGCGTTCACTTGGAATACCATGATCAAGGGGTATTCTAGGATCAACCGCCCTGAGAATGGAATTTCCATGTATCTGTTAATGCTGGCTAATAGCATCAAGCCTGACCGTTTTACATTTCCGTTCTTGTTGAAGGGATTTACCAGTGATATGGCTTCGCAGCATGGGAAAGTGTTACTTAACCATGCAGTGAAGCATGGATTTGATTCTAATTTGTTTGTTCAAAAGGCTTTCATACATATGTTTTCCTTGTGTGGGCTTGTGGATTTGGCTCGCAAGGTTTTTTGTATGGGTGATGCGTGGGAAGTAGTTACCTGGAATATAATGTTATCTGGGTATAACAGAGTTAAGCAATTTAAGAAATCAAAGAAGCTTTTCATTGAGATGGAGAAGAGAGGAGTGTCGCCCAATTCAGTTACACTAGTATTGATGCTTTCTGCATTCTCCAAATTGAAGGATTTAGATGGGGGCAAGAACATTTTTAAGTATATTAAGGAAGGTATTGTTGAACCTAATCTCATATTGGAAAATGCTTTGATTGATATGTTTGCTTCTTGTGGAGAAATGGATGCCGCACAAGGTGTTTTTGACAATATGAAGGCTCGAGATGTTATTTCTTGGACTTCAATTGTTACTGGGTTTTCCAATGTGGGTGAAATTAATTTAGCTCGGAAGTATTTTGATCAAATGCCTGAGAGAGATTATGTTTCTTGGACTGCTATGATTGATGGCTACCTTAGAATGAACCGTTTCATAGAGGTTTTATCACTCTTCCGTGAGATGCAAATATCAAATGTGAAACCTGACGAGTTCACCATGGTTAGCATTCTAACAGCTTGTGCGCATCTGGGAGCACTTGAGCTAGGGGAATGGGTCAAGACTTACATTGACAAAAAAAGTATTAAAAATGATACTTTTGTAGGGAATGCTCTGATAGACATGTATTTCAAATGTGGGAATGTTGGAAAAGCAAAAACAGTATTTAAGGAAATGCGTCAGAAAGACAAATTTACCTGGACAGGGATGATAGTTGGCCTTGCCATTAATGGCCATGGTGAAGAAGCTCTTGCCATGTTTTCAAGTATGATAGAGGCTTCAGTTACACCAGACGAGATAACCTATATTGGTGTTCTGTGTGCATGCACACATGCAGGCATGGTAGAGAAAGGAAAAAGTTTTTTCACTGCCATGACCATGCAACATGGAATTAAACCTAATGTTACACATTATGGATGCATGGTTGATCTCCTTGGTCGAGCTGGGCATTTAGAAGAAGCCATTGAAGTCATAGTGAATATGCCGATTAAACCAAATTCAATTGTTTGGGGATCCCTTCTTGGTGCTTGTAGAGTCCACAAAAATGTGCATCTAGCAGAAATGGCAGCTAAACAAATTCTTGAGTTAGAGCCTGAAAATGGGGCTGTTTATGTCTTGCTGTGTAATATATATGCTGCCTGTGAGAGATGGGAAAACTTGCGTCAGGTCAGGAAAATGATGATGGAGAGGGGAATCAAGAAAACACCAGGTTGCAGTTTGATGGAGTTGAATGGCAATGTTTATGAATTTGTTGCTGGGGATCAGTCACATCCTCAATCTAAAGATATATATGCGAAGTTAGAAAACATGATGCAAGACTTGATAAAAGCAGGGTACTCACCTGATACATCAGAGGTTTTCCTTGATCTAGGGGAAGAGGATAAGGAGACTGCACTTTACCGGCATAGTGAGAAGTTGGCTATTGCTTATGCCCTTCTTAGTTCAGGGCCTGGAGTTACTATAAGAATAGTTAAGAACCTTAGAATGTGTGTGGATTGTCACCATATGGCAAAGCTGGTGTCAGAAGCTTACAACAGGGAACTAATAATTAGAGATAAAACCAGATTCCATCATTTCAGGCATGGTTCATGTTCATGTAATAATTTCTGGTAA 2241 0.398 MLSLPTPLFFSLATFTLPFSWFPNRVISNTLATMCSSNCFEESPISLLERCKSMYQLKQIHSHIVKIGLSSYPLFQNRVLAFCCAHQSGDMDYARQVFDTITQPTAFTWNTMIKGYSRINRPENGISMYLLMLANSIKPDRFTFPFLLKGFTSDMASQHGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCGLVDLARKVFCMGDAWEVVTWNIMLSGYNRVKQFKKSKKLFIEMEKRGVSPNSVTLVLMLSAFSKLKDLDGGKNIFKYIKEGIVEPNLILENALIDMFASCGEMDAAQGVFDNMKARDVISWTSIVTGFSNVGEINLARKYFDQMPERDYVSWTAMIDGYLRMNRFIEVLSLFREMQISNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKKSIKNDTFVGNALIDMYFKCGNVGKAKTVFKEMRQKDKFTWTGMIVGLAINGHGEEALAMFSSMIEASVTPDEITYIGVLCACTHAGMVEKGKSFFTAMTMQHGIKPNVTHYGCMVDLLGRAGHLEEAIEVIVNMPIKPNSIVWGSLLGACRVHKNVHLAEMAAKQILELEPENGAVYVLLCNIYAACERWENLRQVRKMMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKDIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALLSSGPGVTIRIVKNLRMCVDCHHMAKLVSEAYNRELIIRDKTRFHHFRHGSCSCNNFW* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1628 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Pvu10g1628 746 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 321 740 - -
Pvu10g1628 746 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 225 - -
Pvu10g1628 746 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 206 319 - -
Pvu10g1628 746 Pfam PPR repeat 506 537 IPR002885 -
Pvu10g1628 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Pvu10g1628 746 Gene3D Tetratricopeptide repeat domain 157 272 IPR011990 GO:0005515
Pvu10g1628 746 Gene3D Tetratricopeptide repeat domain 393 503 IPR011990 GO:0005515
Pvu10g1628 746 Gene3D Tetratricopeptide repeat domain 504 669 IPR011990 GO:0005515
Pvu10g1628 746 Pfam PPR repeat 281 307 IPR002885 -
Pvu10g1628 746 Pfam PPR repeat 413 438 IPR002885 -
Pvu10g1628 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 438 IPR002885 -
Pvu10g1628 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Pvu10g1628 746 Gene3D Tetratricopeptide repeat domain 281 392 IPR011990 GO:0005515
Pvu10g1628 746 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Pvu10g1628 746 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Pvu10g1628 746 TIGRFAM PPR: pentatricopeptide repeat domain 476 511 IPR002885 -
Pvu10g1628 746 TIGRFAM PPR: pentatricopeptide repeat domain 208 241 IPR002885 -
Pvu10g1628 746 TIGRFAM PPR: pentatricopeptide repeat domain 309 339 IPR002885 -
Pvu10g1628 746 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Pvu10g1628 746 TIGRFAM PPR: pentatricopeptide repeat domain 413 438 IPR002885 -
Pvu10g1628 746 Gene3D Tetratricopeptide repeat domain 20 156 IPR011990 GO:0005515
Pvu10g1628 746 SUPERFAMILY TPR-like 418 594 IPR011990 GO:0005515
Pvu10g1628 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Pvu10g1628 746 PANTHER - 37 225 - -
Pvu10g1628 746 PANTHER - 321 740 - -
Pvu10g1628 746 PANTHER - 206 319 - -
Pvu10g1628 746 Pfam DYW family of nucleic acid deaminases 654 746 IPR032867 GO:0008270
Pvu10g1628 746 Pfam E+ motif 623 648 IPR046849 -
Pvu10g1628 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 509 IPR002885 -
Pvu10g1628 746 Pfam E motif 556 618 IPR046848 -
Pvu10g1628 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 337 IPR002885 -
Pvu10g1628 746 Pfam PPR repeat family 207 254 IPR002885 -
Pvu10g1628 746 Pfam PPR repeat family 104 151 IPR002885 -
Pvu10g1628 746 Pfam PPR repeat family 439 485 IPR002885 -
Pvu10g1628 746 Pfam PPR repeat family 338 385 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1628 Pvu-Chr10 42545183 42547642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1628 94 746 Glycoside Hydrolase AT3G49170 34.389 3.28e-132 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1628 - - gmx:100801078 1347.8