Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1590 ATGATGGGTTCCGGGTCGGGTTCTCTGGTGTGGTTCCGGAAGGGTATTCGGATCCACGACAACCCGGCTCTCGAGTTCGCGTCCCGAAGTGCCTCTCATCTCTACCCTGTCTTTGTCATCGACCCGCATTATATGAAACCCGACCCGAATGCTCCCTCACCCGGGTCATCGCGCGCGGGTCTGAACCGCATCAAGTTCTTGCTGGAGAGCCTCGTGGACCTTGATCTGAACCTCAAGAACCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCAGCTGAAGTTGTCATTCAATGCTTGAAGGAGTGGAATGTCAACAAGCTGTGCTTTGAGTACGACACTGACCCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAATTTTGCACTTGGTGCTGGAATTGAGGTTTTCTCTCCTGTGAGTCACACACTCTTCAACCCCACGGATATTATACACAAGAACGGAGGGAAGCCGCCACTTAGTTATCAGTCGTTTGTCAAGCTTGCTGGGGAACCACCCTTTCCTCTCACAACCATGTACTCTTCACTTCCTCCGGTTGGCCATCTAGGAAGTTGTGTTATTTCTGAAGTTCCAACGATCACAGATCTTGGATATGGAGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGGGGTGAGTCAGAAGCATTGAGGAGATTGGATGAATGCATGAAAAACAAGGGGTGGGTGGCAAACTTTGAGAAACCCAAGGGCAATCCATCTGCATTTCTTAAGCCTGCAACAACTGTTTTATCACCCTACCTGAAATTTGGTTGTCTATCTTCCAGATATTTCTACAGGCAAATTCAGGATATATATAAAAGTATGCCAAAGCATACATCACCACCCGTTTCTCTTGCAGGACAGTTGTTGTGGCGAGAATTCTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGATAGAATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGATCCAGCTACGCAAATGGGGTTGGATGCATCATTTGGCCCGGCATTCTGTAGCATGTTTTCTAACTCGTGGCGATCTGTTTGTTCACTGGGAAAAGGGACGAGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAACGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTACAATCGTATTTATTCCCCAACCACATTTGGTAAAAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTGAAAGATATGCCCAGGGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGTATTCAGACCAAAGCCAATTGCATAATTGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATTCAGCTAGTAAAGAGTGCCGAGGGAAAATGGGGGAGGCATATGCATTGAATAAAAAATTGAATGGTTTGGTTAGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTAGATGAGAGTGAAAGGCAAGAGCCTCAAGCTAAAAGATCTAAGCAACAACTGTTGGACTGA 1611 0.4531 MMGSGSGSLVWFRKGIRIHDNPALEFASRSASHLYPVFVIDPHYMKPDPNAPSPGSSRAGLNRIKFLLESLVDLDLNLKNLGSRLLILKGDPAEVVIQCLKEWNVNKLCFEYDTDPYYQALDVKVKNFALGAGIEVFSPVSHTLFNPTDIIHKNGGKPPLSYQSFVKLAGEPPFPLTTMYSSLPPVGHLGSCVISEVPTITDLGYGDAEQDEFSPFKGGESEALRRLDECMKNKGWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYRQIQDIYKSMPKHTSPPVSLAGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWTAPKSIQTKANCIIGKDYPMPVVSHDSASKECRGKMGEAYALNKKLNGLVSEDDLKNLRRKLDESERQEPQAKRSKQQLLD* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1590 536 Pfam DNA photolyase 8 169 IPR006050 -
Pvu10g1590 536 Coils Coil 510 536 - -
Pvu10g1590 536 Gene3D HUPs 4 141 IPR014729 -
Pvu10g1590 536 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 144 IPR006050 -
Pvu10g1590 536 CDD USP_Like 23 108 - -
Pvu10g1590 536 MobiDBLite consensus disorder prediction 517 536 - -
Pvu10g1590 536 Pfam FAD binding domain of DNA photolyase 295 491 IPR005101 -
Pvu10g1590 536 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 8 502 - -
Pvu10g1590 536 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 311 535 - -
Pvu10g1590 536 Gene3D - 194 310 - -
Pvu10g1590 536 Gene3D - 142 183 - -
Pvu10g1590 536 PANTHER CRYPTOCHROME 8 502 IPR002081 -
Pvu10g1590 536 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 208 497 IPR036134 -
Pvu10g1590 536 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 187 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1590 Pvu-Chr10 42282857 42287293 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1590 K02295 - gmx:100780347 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1590 10 42282857 42287293 Pvu10g1590 10 42282857 42287293 ECH