Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1553 ATGGTGGATGAAGAAGGAGCGCCAAAATTCCCAGGTTTTCCTTTCGAACCCTACTCCATTCAGATTGATTTCATGAACAGCTTGTATCAATCTCTCAACCAAGGAGGCGTCTCTATGTTGGAAAGCCCAACTGGCACAGGGAAGACCATGAGTGTGATTTGTAGTGCCTTGCAATGGGTGCTGGATCGGAGGCTACAAGAGGAGGCAGTTTGTGATGAGAATCCAGGGGGTGGCAGTGGTGGCGGTGGCGGCGGAGTTGGTTCAGATGAGGAACCTGATTGGATGAGGGACTTTGTCGTCAACAAAGTGGAGAATAATAAGAAGAAAGAAAAGCGCGGGTCTGTGTGGGGAAAATCTCATAATAGTAAAAAGAGTACGGAAATTCGTAAGGATTTTATGGTTATGGGTGGTGGAGAGGAGAAGGGGTGTGAGAGTATGCAAACGAAAATTGATGCAGTGGATGGTATTGATAAGGAGTTTTTATTGGAGGAATACGAGAGTGAAGATGAGGGAGGGCCAGGGAGTGTGATTTCCAAGAGGAAGACTGTTAAAACCTCCTTTAGTTCCTCTAGTGAAGATGAGTCTAGCGAGGAGGAAGAGGAGGAGAAGAAGTTGAAGGTTTATTTCTGTAGTAGAACTCATTCACAGCTTTCGCAGTTCATAAAGGAGCTGAGGAGGACGGTCTTTGCCAAAGAGATGAAGGTTGTGAGTTTAGGCTCCAGGAAAAATCTTTGCATTAATGAAGAGGTAGTTGCACTTGGAAGCTCTACACGCATAAACGAGCGATGCTTGGAACTTCAGAAGAAAAAGAAAAATGGTGCGACAAAAGTTAAGAACTTAAAAGTAGGTGCAGGGATACGCAGAAGAAAGGCCACCTCTGGCTGCCCAATGCTTACAAAACATAGAGTTCAACAAGAATTTAGGAATGAGGTATTTCAACAAAGACCCTTGGATATTGAAGATCTTGCTAATCTTGGAAGAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCATGGTTCGAAGAGCTGATCTTGTTGTCCTACCATATCAATCTCTTCTGTCTAAATCATCTCGTGATGCACTCGGCCTGAATTTGAAATCCAATATTGTTATAATAGACGAGGCTCATAATTTAGCTGATTCACTCATCGACATGTATGATTCCAAAATTACTTTTTCACAGCTGGAGACTGTGCACAACCATTTGGAACAGTACTTTGGGAGATTCAGGAATCTTTTGGGACCTACTAATCGGAGATACATTCAAACTCTCATGGTCCTCACTCAAGCTTTTCTCCGAGTACTACTTGATGATAAAGATGGAAATCTCATAGATTCTTGCTGTGATTTAGCTCAAGCTTCAAGTATCGCCTCCGATTTTACTATGGCCATCAATGATTTTTTATTCGAACAAAATATAGACAATATCAACTTGGTCAAATTGTTGAAATATATTAAGGAAAGTAATATCATGCACAAGGTTAGTGGTTATGGAGAGAAGTTGGCTACCTTGGAGAAGATACCAGCACACCATAAGATCAGGGAACATGCTGAAGAGGGAAGTTGTCTATCTGCTTTCCAGGCCTTAGCTAACATATTACTATCACTGACAAACAATGATGGTGATGGAAGGATAATAATTTCCAGGTCCAGGTTAACGAGCCTCAAGAAGCAAGGAGGATATATAAAGTATGTTATGCTTAGTGGAGAGAAGATTTTTTCTGAGATTGTAGATGAAGCACATGCCGTTGTATTAGTAGGGGGAACACTACGACCTATAGAAGAGACTAGGGAGAGACTCTTTCCATGGTTACCACCAAACCAGCTGCATTTCTTTTCATGCGGGCATATTGTCCCTCCAGATAGCATTATGCCAATTGCTCTTGCACGGGGGCCTACTGGACGCACCTTTAATTTTAGCTTCAGCTCCAGGAGCTCACCAGACATGATACGAGAACTGGGCCTTTTGCTGTGTAATCTGGTGACTGTGGTTCCGGAAGGAATTGTTGTCTTCTTCCCTTCTTTTGATTATGAAAATAGTGTATATGAGCATTGGGAATCATCTGGTATCCTTGAAAGGATTACAAAGAGGAAGCGTGTCTTTAGGGAGCCTAGAAATAACATGGACGTTGAATCCGTTCTCAAGGAATATAAAGATACCATTTATACACTATCGAGTACGAATTCAGAAGTAAACCAAGCATCTTATAGTGGTGCAATACTCCTTGCCGTTGTTGGTGCGAAGTTATCCGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGTGTAGTCATGGTTGGACTACCCTATGCTAGCCCATCTGATATAGAGTTGTTAGAGAGGATAAAGCACATTGATCGTTTTCAAAATTTAAAGCTTGAGAATTCTAGCGTTTCTACCAGTTATGATTTATACAGTAAACATGTTGAAGGTGGTTTTGACATCTTAAGAAGTTGCACTCACAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCTATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGACACGAGATATGCATCTGATTCCTCAAAACGGAGTTTGGCTCACCCAGTCACCAAGCTCCCGGAGTGGATAAAAGATCGTCTTGTTTCTTCTATTAACTATGGTGAGGTACATAGGTCGTTGCATCAGTTTTTCAAACTGAAAAAGACATGCAGCCTATAG 2733 0.4182 MVDEEGAPKFPGFPFEPYSIQIDFMNSLYQSLNQGGVSMLESPTGTGKTMSVICSALQWVLDRRLQEEAVCDENPGGGSGGGGGGVGSDEEPDWMRDFVVNKVENNKKKEKRGSVWGKSHNSKKSTEIRKDFMVMGGGEEKGCESMQTKIDAVDGIDKEFLLEEYESEDEGGPGSVISKRKTVKTSFSSSSEDESSEEEEEEKKLKVYFCSRTHSQLSQFIKELRRTVFAKEMKVVSLGSRKNLCINEEVVALGSSTRINERCLELQKKKKNGATKVKNLKVGAGIRRRKATSGCPMLTKHRVQQEFRNEVFQQRPLDIEDLANLGRTMGTCPYYGSRSMVRRADLVVLPYQSLLSKSSRDALGLNLKSNIVIIDEAHNLADSLIDMYDSKITFSQLETVHNHLEQYFGRFRNLLGPTNRRYIQTLMVLTQAFLRVLLDDKDGNLIDSCCDLAQASSIASDFTMAINDFLFEQNIDNINLVKLLKYIKESNIMHKVSGYGEKLATLEKIPAHHKIREHAEEGSCLSAFQALANILLSLTNNDGDGRIIISRSRLTSLKKQGGYIKYVMLSGEKIFSEIVDEAHAVVLVGGTLRPIEETRERLFPWLPPNQLHFFSCGHIVPPDSIMPIALARGPTGRTFNFSFSSRSSPDMIRELGLLLCNLVTVVPEGIVVFFPSFDYENSVYEHWESSGILERITKRKRVFREPRNNMDVESVLKEYKDTIYTLSSTNSEVNQASYSGAILLAVVGAKLSEGINLSDGMGRCVVMVGLPYASPSDIELLERIKHIDRFQNLKLENSSVSTSYDLYSKHVEGGFDILRSCTHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSLAHPVTKLPEWIKDRLVSSINYGEVHRSLHQFFKLKKTCSL* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1553 910 SMART deadxpd 9 420 IPR006554 GO:0003678|GO:0016818
Pvu10g1553 910 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 9 894 IPR028331 -
Pvu10g1553 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 391 IPR027417 -
Pvu10g1553 910 Pfam DEAD_2 209 397 IPR010614 GO:0003677|GO:0003678|GO:0005524
Pvu10g1553 910 MobiDBLite consensus disorder prediction 71 92 - -
Pvu10g1553 910 Gene3D - 637 877 IPR027417 -
Pvu10g1553 910 SMART Cxpdneu3 677 863 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Pvu10g1553 910 Gene3D - 14 74 IPR027417 -
Pvu10g1553 910 MobiDBLite consensus disorder prediction 109 129 - -
Pvu10g1553 910 Pfam Helicase C-terminal domain 659 872 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Pvu10g1553 910 Gene3D - 181 434 IPR027417 -
Pvu10g1553 910 TIGRFAM rad3: DNA repair helicase (rad3) 181 894 IPR013020 GO:0003678
Pvu10g1553 910 MobiDBLite consensus disorder prediction 165 198 - -
Pvu10g1553 910 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 426 IPR014013 GO:0005524
Pvu10g1553 910 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 9 894 IPR045028 -
Pvu10g1553 910 SMART ultradead3 13 425 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1553 Pvu-Chr10 41983724 41988786 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1553 K11273 - gmx:106794132 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1553 10 41983724 41988786 Pvu10g1553 10 41983724 41988786 ECH