Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1533 GTTTTAAATTACAGTATTATACCATTTTGTGAGGTATTTGCTTGCCTTAAACAAACCCATAACCAAGAGGGAAAGTGTGCAATTTTTCTGGTGATATTTAGAACTGGTCTGGAGGGACCAGGACTCACTGTTGCGCAGAAAATTTGGTATTGTGTTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTGCAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCACGACGCCTATGGATCTTGATACAACGAGTAGAAGGAGTTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACGGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAATCGGGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAGTTCTCGGAAATGTTACTGTTGCTTCTTCCTCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTCTCAAAAGATAAATCATCAAGTTCATCCGAAGATGGCACAGCATGTCCCATTTGCCTGGCCACTCCAACCATTCCTTTTGTTGCTCTGCCTTGTCAGCACAGATACTGTTACTACTGTCTTAGGACACGATGTGCTGCAGCTCCATCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGGCATGGTGGTGTCCCCGCAGAATGA 735 0.434 VLNYSIIPFCEVFACLKQTHNQEGKCAIFLVIFRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRVEGVYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSSEDGTACPICLATPTIPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVPAE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1533 244 PANTHER - 33 241 - -
Pvu10g1533 244 SMART ring_2 188 228 IPR001841 -
Pvu10g1533 244 Pfam Pex2 / Pex12 amino terminal region 37 166 IPR006845 -
Pvu10g1533 244 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Pvu10g1533 244 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Pvu10g1533 244 SUPERFAMILY RING/U-box 183 234 - -
Pvu10g1533 244 CDD RING-HC_PEX2 187 229 - -
Pvu10g1533 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 241 IPR013083 -
Pvu10g1533 244 Pfam Zinc finger, C3HC4 type (RING finger) 188 228 IPR018957 GO:0046872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1533 K06664 - gmx:100805856 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1533 10 41844860 41848110 Pvu10g1533 10 41844860 41848110 ECH