Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1502 ATGAAGAGGTTGCACTTCTTCACTTTGCTTGGCCTCAAAGCAACCCACTGCCAAGCCATCAAGTTAGGCTCCATCGCAAACCTTTACATTGCCAACAACCTCATAACTTCGTACGCAAAATGCACAAAATTAACATCTGCTCACCAACTATTCGACGAAATGCCTCACAGAGACACTGTGTCTTGGAACGCCATCGTTTCTGCTTATGTAAACTCTGGGCACCTGGGCACCACATGGAAAATCGTCAGTGCCATGAGAAGGTCAGCTCTTGCATTTGACAGCCACACATTGGGAAGCATTCTCAAGGGTGTCGCCCAAGCTGGTGAGCTGTCACTTGGTGAACAGGTGCATTCTATCATGCTCAAGATGGGGTTATCAGAAAATATGTTTTCTGGTAGTGCCCTCTTGGACATGTATGCCAAGTGTGGGAGAGTTGATGATGCGTACATTATTTTTCAAACCATGCCAGAGCGTAATTATGTGTCGTGGAATACACTTGTTGCTGGTTATTCACGAGTTGGTGATCGTGACATGGCGTTCCGGGTGCTACGTTGTATGGAGCTTGAGGGTGTAGAAATTGATGATGGCACGATGTCTCCACTTTTGACATTGCTTGATGATGCTGAGTTTTGTTGGTTGACAATGCAGTTGCATTGTAAAATTGTGAAACATGGGTTGGAATTGTTTAACACTGTCTGCAATGCTTCTATCATAGCCTATTCTGATTGTTGTTCTTTGCAAGATGCTGAGAGAGTATTTCATGGTGCTGTTGCTTGTCGTGATGTGGTTACATGGAATTCCATTCTTAGTGCTTATTTGATGCACGAGAAAGAAGATCTTGCATTTAAAGTGTTCATTGATATGCAGAATTTTGGGTTTGAGCCTGATACTTATACTTACACTGGGAGTGTCAGTGCTTGTTCTGTACAAGAGTGTAAAAGCAATGGAAAATGTTTGCATGGGTTGGTGATAAAAAGCGGTCTTGAAGATTCTGTTCCTATTTCCAATGCTTTGATTGCCATGTACATCAGATTTAATGATAAGGGCATGGAAGATGCATTAAGAATATTCTTTTCAATGAATCTAAAAGATTGTTGCACTTGGAACTGCATTTTGGCAGGATATGTTCAAGTTGGTTTGAGTGAAGATGCCTTGAGGCTATTTCTACATATGAGATCTTTGGTCGTAGAAATTGACCATTATACCTTTTCGGCTGTCATAAGATCATGCTCGGATTTAGCAACTCTACAGTTAGGTCAACAGGTTCATGTCTTAGCACTTAAAGTAGGATTTGATAACAATAATTATGTTGGGAGTTCGTTGATATTCATGTATTCTAAATGTGGGATCATAAAAGATGCTAGGAAATCTTTTGAAGCAACATCCAAAGACTATGCAATTGTTTGGAATTCAATCATCTTTGGGTATGCACAACATGGACAGGGAAACATTGCGCTTGACCTCTTTCACTTAATGAATAAGAGAAAGGTGAAACCTGATCATATAACCTTTGTTGCAGTTCTAACTGCGTGCAGTCATAATGGGCTAGTAGAAGAAGGCTGCAAATTTATAGAGTCCATGGAGTCTGATTTTGGTATTCCACGACGACACGAGCACTATGCTTGTGCAATTGATCTCTATGGTCGGGCAGGGCATCTTGAGAAGGCAAAAGCTTTGGTTGAAACAATGCCTTTTGAACCTGATGCAATGGTGTTGAAAACTTTGTTAGGTGCATGTAGATTTTGTGGTGATATTGAATTAGCTTCTCAAATAGCAAAAACTTTGCTAGAGCTGGAGCCTGAGGACCACTGCACTTATGTTATACTCTCTGAAATGTATGGACGATTCAAAATGTGGGATGAGAAGGCTACTGTAACAAGGATGATGCGAGAAAGGAGAGTGAAAAAGGTTCCAGGTTGGAGTTGGATAGAAGTGAAGAATAAAGTGCATGCTTTCAACGCTGAAGATCATTCCCATCCCCAATGTGACGAGATATACACACAACTACAACAACTAAATCAAGGAATTAAATTGTTCGCTTTCAAGGATGGTGTACTCAGTGTTTTTCACAAGATGCTGATATGA 2085 0.4082 MKRLHFFTLLGLKATHCQAIKLGSIANLYIANNLITSYAKCTKLTSAHQLFDEMPHRDTVSWNAIVSAYVNSGHLGTTWKIVSAMRRSALAFDSHTLGSILKGVAQAGELSLGEQVHSIMLKMGLSENMFSGSALLDMYAKCGRVDDAYIIFQTMPERNYVSWNTLVAGYSRVGDRDMAFRVLRCMELEGVEIDDGTMSPLLTLLDDAEFCWLTMQLHCKIVKHGLELFNTVCNASIIAYSDCCSLQDAERVFHGAVACRDVVTWNSILSAYLMHEKEDLAFKVFIDMQNFGFEPDTYTYTGSVSACSVQECKSNGKCLHGLVIKSGLEDSVPISNALIAMYIRFNDKGMEDALRIFFSMNLKDCCTWNCILAGYVQVGLSEDALRLFLHMRSLVVEIDHYTFSAVIRSCSDLATLQLGQQVHVLALKVGFDNNNYVGSSLIFMYSKCGIIKDARKSFEATSKDYAIVWNSIIFGYAQHGQGNIALDLFHLMNKRKVKPDHITFVAVLTACSHNGLVEEGCKFIESMESDFGIPRRHEHYACAIDLYGRAGHLEKAKALVETMPFEPDAMVLKTLLGACRFCGDIELASQIAKTLLELEPEDHCTYVILSEMYGRFKMWDEKATVTRMMRERRVKKVPGWSWIEVKNKVHAFNAEDHSHPQCDEIYTQLQQLNQGIKLFAFKDGVLSVFHKMLI* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1502 694 Pfam PPR repeat 133 159 IPR002885 -
Pvu10g1502 694 Pfam PPR repeat 60 87 IPR002885 -
Pvu10g1502 694 Pfam PPR repeat 32 56 IPR002885 -
Pvu10g1502 694 Pfam PPR repeat 161 191 IPR002885 -
Pvu10g1502 694 Pfam PPR repeat 540 563 IPR002885 -
Pvu10g1502 694 PANTHER BNAA02G27730D PROTEIN 86 683 - -
Pvu10g1502 694 PANTHER BNAA02G27730D PROTEIN 15 88 - -
Pvu10g1502 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Pvu10g1502 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Pvu10g1502 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 58 92 IPR002885 -
Pvu10g1502 694 Pfam E motif 584 644 IPR046848 -
Pvu10g1502 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 158 IPR002885 -
Pvu10g1502 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Pvu10g1502 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Pvu10g1502 694 Gene3D Tetratricopeptide repeat domain 16 116 IPR011990 GO:0005515
Pvu10g1502 694 Gene3D Tetratricopeptide repeat domain 209 310 IPR011990 GO:0005515
Pvu10g1502 694 Gene3D Tetratricopeptide repeat domain 311 426 IPR011990 GO:0005515
Pvu10g1502 694 Gene3D Tetratricopeptide repeat domain 437 674 IPR011990 GO:0005515
Pvu10g1502 694 Pfam PPR repeat family 467 512 IPR002885 -
Pvu10g1502 694 Pfam PPR repeat family 260 306 IPR002885 -
Pvu10g1502 694 Pfam PPR repeat family 364 410 IPR002885 -
Pvu10g1502 694 Gene3D Tetratricopeptide repeat domain 118 188 IPR011990 GO:0005515
Pvu10g1502 694 PANTHER OS01G0913400 PROTEIN-RELATED 86 683 - -
Pvu10g1502 694 PANTHER OS01G0913400 PROTEIN-RELATED 15 88 - -
Pvu10g1502 694 TIGRFAM PPR: pentatricopeptide repeat domain 467 500 IPR002885 -
Pvu10g1502 694 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Pvu10g1502 694 TIGRFAM PPR: pentatricopeptide repeat domain 263 297 IPR002885 -
Pvu10g1502 694 TIGRFAM PPR: pentatricopeptide repeat domain 161 194 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1502 Pvu-Chr10 41585492 41587980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1502 13 692 Glycoside Hydrolase AT3G49170 30.725 7.13e-106 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1502 - - gmx:100775946 1188.71