Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu10g1491 | ATGGGCGTAACTTTGTCGGGGCTATCTCTCTTCTGCTTGCGAATAACAAACAGGTGCGGCTCCATAACTTCGCTGAGCATATACTCCGTCCCCGTCATTTTCCTGAAGACCACAACTATTATTACAATCCACGAAACCCTAAAAGATCACGTCATCAACTCCCACTGGGAAAAGCTTCACCCTTTGTGCCCAGTTCTCACGCCGTTCCGTCTCAAACACCTCCTCCTCAACCTCCAAGACGACCACGTTTTGTCCCTCAAACTCTCCCAATGGCTCCTCCATCACCACCCATCAACGCACACCCTCGAAACCCTCTCTTTCCTCCTCCACACCCTCGCCAAGCATCGCCAATTCAAAACCATTCAAACCATCCTCACAAAAATCCTCTCTTCAAACCCTCCCCACACCCTCTTCCACTCTCTCCTACACTCCTACCCTCTCTGCAATGCTTCCCCTCTCGTCTTCGACGCCGTCTTTAAAACCCTCGCCCACGCCAGTAAATTCCGCAGCGCCACCCTCGTCTATACCCTAATGAAGCAGCACGGCTTCTCCCTCACTGTTGAATCCTGCAACGCGTTTTTGAGTTCTCTGCTTCGCCTCCGCAGAGCTGATATTGCTCTGTCGTTTTACCGGGAGATGCGTCGCTCTTACGTTTCGCCTAATGTGTACACTCTCAACATGGTTGTTCGTGCTCATTGCATGCTGGGGGAGGTGCAGAAGGGGTTTGAGATTTTCCAGAAGATGAGGGACATGGGCTTGAGTCCTACTGTTGTGTCTTTCAATACTTTGATTTCGGGGTATTGTAACAAGGGGCTGTTTGGGTTGGCGTTAAAGGTTAAGGCTTTGATGGGGGATAGTGGAGTGCAGGCGAATGTGGTTACTTTTAACACTCTGATTAATGGGTTTTGTAAGGAGAGGAAGTTGCATGAGGCGAACAGGGTTTTCCGTGAGATGAAGGTTGCCAATGTGGCTCCCAATGTTGTGACTTACAATACTTTGTTGCATGGGTATGGCGAGGTTGGAGACAGTGAAATGGGTGGGAGGGTTTATGAGGAGATGGTGAGGAATGGGGTTAAGGCTGATATATTAACTTATAATGCGTTGATTTTGGGGCTGTGTAAGGAGGGGAAGACAAAGAAGGCTGCAGGGTTTGTGAAGGAGCTTGATAAAGAGAACTTGGTTCCCAATGCGAGTACTTTTTCTGCTCTTATTACTGGGCAGTGTGTGAGGAACAATTCTGAGCGTGCCTTTCTTATTTATAGGAGCATGGTGAGGAGTGGTTGTAATCCAAATGAGCACACTTTTCAGATGCTGATATCTGCTTTTTGCAAGAATGAGGACTTTGATGGGGCTGTGCAGGTTTTGAGGGACATGCTGGGCAGATTGTTGAGTCCAGATTCCAGCATGTTATCTGAGCTCTGTCATGGACTTGGCAGGTGTGGGAAAAGCCAGTTGGCATTGTCGCTGTGTAGCGAGATGGAAGCGAGGCGGCTATTGCCGGATGGGTTTGACAAAACATTATTCATCACACATCCTGAAACTGAGACAAGTCGCTGA | 1557 | 0.4868 | MGVTLSGLSLFCLRITNRCGSITSLSIYSVPVIFLKTTTIITIHETLKDHVINSHWEKLHPLCPVLTPFRLKHLLLNLQDDHVLSLKLSQWLLHHHPSTHTLETLSFLLHTLAKHRQFKTIQTILTKILSSNPPHTLFHSLLHSYPLCNASPLVFDAVFKTLAHASKFRSATLVYTLMKQHGFSLTVESCNAFLSSLLRLRRADIALSFYREMRRSYVSPNVYTLNMVVRAHCMLGEVQKGFEIFQKMRDMGLSPTVVSFNTLISGYCNKGLFGLALKVKALMGDSGVQANVVTFNTLINGFCKERKLHEANRVFREMKVANVAPNVVTYNTLLHGYGEVGDSEMGGRVYEEMVRNGVKADILTYNALILGLCKEGKTKKAAGFVKELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCNPNEHTFQMLISAFCKNEDFDGAVQVLRDMLGRLLSPDSSMLSELCHGLGRCGKSQLALSLCSEMEARRLLPDGFDKTLFITHPETETSR* | 519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu10g1491 | 518 | Gene3D | Tetratricopeptide repeat domain | 81 | 248 | IPR011990 | GO:0005515 | |
| Pvu10g1491 | 518 | Gene3D | Tetratricopeptide repeat domain | 389 | 507 | IPR011990 | GO:0005515 | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Pvu10g1491 | 518 | Pfam | PPR repeat | 427 | 458 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 433 | 466 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 258 | 291 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 189 | 221 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 293 | 327 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 399 | 432 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 328 | 361 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 223 | 257 | IPR002885 | - | |
| Pvu10g1491 | 518 | TIGRFAM | PPR: pentatricopeptide repeat domain | 364 | 397 | IPR002885 | - | |
| Pvu10g1491 | 518 | Pfam | PPR repeat family | 291 | 337 | IPR002885 | - | |
| Pvu10g1491 | 518 | Pfam | PPR repeat family | 220 | 269 | IPR002885 | - | |
| Pvu10g1491 | 518 | Pfam | PPR repeat family | 361 | 408 | IPR002885 | - | |
| Pvu10g1491 | 518 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 48 | 511 | - | - | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 326 | 360 | IPR002885 | - | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 221 | 255 | IPR002885 | - | |
| Pvu10g1491 | 518 | Gene3D | Tetratricopeptide repeat domain | 249 | 321 | IPR011990 | GO:0005515 | |
| Pvu10g1491 | 518 | Gene3D | Tetratricopeptide repeat domain | 322 | 388 | IPR011990 | GO:0005515 | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Pvu10g1491 | 518 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 48 | 511 | - | - | |
| Pvu10g1491 | 518 | Pfam | PPR repeat | 189 | 216 | IPR002885 | - | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Pvu10g1491 | 518 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu10g1491 | 308 | 510 | Glycosyltransferase | AT1G05670 | 23.039 | 2.65e-12 | 67.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu10g1491 | - | - | gmx:100792776 | 734.176 |