Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1483 ATGAATTTCTTCAACTGGGTTCGTTTGTTTATCGTTTTTCATGCCTTTGCTGCAGCACCCAGCTTCTTCTTGTTAACAGATTCGTTCACAGAACTCCCCACCAACTTTCTAGATGCTGCCAAGAAGCCTGAGGTATTTGACTGGATGGTCAGAATCAGAAGGAAGATTCACCAGAATCCAGAATTGGGTTATGAGGAATTTGAGACCAGTAAAGTCATTAGAGAGAAATTGGATCAACTGGGTATACCCTATAAACACCCTGTTGCAATCACTGGTGTAATTGGCTTCATTGGGACTGGAAGATCGCCTTTTGTTGCTATAAGAGCTGATATGGATGCTCTTCCCATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGTCATGATGCTCATGTGGCTATGCTTCTTGGTGCTGCGAAGATTCTTAAACAGCATGAAAAAGAGATACAAGGAACTGTAGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGGGGAGCCAAGAAAATTTTAGATGCTGGAGCCTTAGGAAAGGTTTCAGCCATTTTTGGGTTGCATGTGTCACGCGACTTTCCATTAGGTGAAGTGGGCTCTAGGTCTGGTCCAATGTTAGCAGGAAATGGTTTTTTTGAAGCTATAATAAAGGGAAAAGGAGGTCATGCAGCTATTCCTCAACAATCTATAGACCCTATATTGGCAACTTCTAATGTTATAATTAGCTTACAGAATCTTGTTTCTCGTGAGGCTGATCCTCTGGATTCCCAGGTTGTGACTGTAGGAAAATTCCAAGGAGGCAGTGCATTCAATATCATTCCAGATTCTGTCACGATCGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGTTTCCAGCAATTAAAACAGCGCATTGAGGAGGTTGTGATTGCACAAGCTTCTGTGCAGAGGTGCAATGCAACAGTCAACTTCCTTCAGGATCAGAATCCTTTCTTTCCCGTAACCATAAACAACGGTGACTTGCATGAACATTTTCAGAGTGTTGCTGGGAATTTGCTTGGCGTGAATAAAGTAAATGAGATGCAACCTTTGATGGGAGCTGAAGACTTTTCATTCTATCAAGAGGTTATACCTGGCTACTTTTTCATGGTTGGAATGCAGAATGCCTCACATGAAAAACTTGAGCAAGTGCACTCACCCCATTTCAAGATCAATGAAGATGTACTTCCTTATGGGGCTGCACTTCATGCCTCATTAGCTGTTAGTTATCTTCTGAAACATCCACAGGACATAGCCTCTGCAGAGGGGAAATATCACGATGAATTGTAA 1329 0.4281 MNFFNWVRLFIVFHAFAAAPSFFLLTDSFTELPTNFLDAAKKPEVFDWMVRIRRKIHQNPELGYEEFETSKVIREKLDQLGIPYKHPVAITGVIGFIGTGRSPFVAIRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKQHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALGKVSAIFGLHVSRDFPLGEVGSRSGPMLAGNGFFEAIIKGKGGHAAIPQQSIDPILATSNVIISLQNLVSREADPLDSQVVTVGKFQGGSAFNIIPDSVTIGGTFRAFSKESFQQLKQRIEEVVIAQASVQRCNATVNFLQDQNPFFPVTINNGDLHEHFQSVAGNLLGVNKVNEMQPLMGAEDFSFYQEVIPGYFFMVGMQNASHEKLEQVHSPHFKINEDVLPYGAALHASLAVSYLLKHPQDIASAEGKYHDEL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1483 442 CDD M20_IAA_Hyd 49 424 IPR044757 GO:0009850|GO:0016787
Pvu10g1483 442 Gene3D - 214 332 - -
Pvu10g1483 442 SUPERFAMILY Zn-dependent exopeptidases 44 426 - -
Pvu10g1483 442 PIRSF Amidohydrol_AmhX 36 428 IPR017439 GO:0016787
Pvu10g1483 442 SUPERFAMILY Bacterial exopeptidase dimerisation domain 215 324 IPR036264 -
Pvu10g1483 442 Pfam Peptidase family M20/M25/M40 106 420 IPR002933 GO:0016787
Pvu10g1483 442 Pfam Peptidase dimerisation domain 216 311 IPR011650 -
Pvu10g1483 442 Gene3D Zn peptidases 49 409 - -
Pvu10g1483 442 PANTHER AUXIN CONJUGATE HYDROLASE 1 442 - -
Pvu10g1483 442 TIGRFAM amidohydrolases: amidohydrolase 49 411 IPR017439 GO:0016787
Pvu10g1483 442 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 442 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1483 Pvu-Chr10 41452377 41457734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1483 K21604 K14664 gmx:100789077 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1665 5 38668102 38670104 Pvu10g1483 10 41452377 41457734 PCT