Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1456 ATGACGGCTCTAAGAGAGAAAACTGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCAGAAGTTGATGCAATCCTGGTGATGGAAGGTGGAAAAGTTACTCAATCAGGTAACTATGAGAATCTCTTAACAGCTGGGACTGCCTTTGAACAACTTGTGAGCGCGCATAAGGAAGCAATTACAGAGTTGGATCAGAATAATGAGAACAAAACTCAGAGAGAAGAGTCTGAAGGTGTTTATCTAACTAAAAATCAGAGTGAGGGGGAGATTTCTACCGAGGGTCAACTTGGGATACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTTGAAGACATTATGGGATTATATTTCATTTTCCAGGGGTTCATTGATGCTGTCATGGATACTTTTGGCACAATTTGCTTTTATTGCTTTTCAAACTGCATCAATGGTTTGGCTTGCTTTAGCCATTGAAATTCCAAAAATCACCAGTGCCACCTTGATTGGGGTGTACTCTATAATCTCATTTGCTAGTGCTGCATTTATATATGTAAGGTCTCTCTTGACCTCTTACCTCGGATTAAAAGCTTCTAAAGCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCTGTAGGAAGGATATTAACGAGAGCTTCATCAGATTTAAGTGTTTTGGACTTTGATATACCTCATTCGATCACCTTTGTAGCAGCTGTAGCAATTGAAATTTTGGTGACGATTTGTGTAATGGTTTTAGTAACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAGTCGCATCAAAATATGTTCAGGGATATTATCAAGCCTCGTCAAGGGAGTTGATGAGGATCAATGGAACCACAAAAGCTCCTGTGATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTACTGTGAGAGCATTTAATATGGTAGAAAGATTTTTTAAGACTTACTTAAAGCTTGTGGACACAGACGCATCACTGTTTTTTCATTCTAATGTGACCATGGAATGGTTACTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTATTCTATTTCCTCAGGGATACGTGTCCACGGGCCTTGTGGGACTATCTCTCTCTTATGCTTTAACCTTCACAGCATCCTACACGTTTTGGACTCGATGGTATTGCAATTTATTAAACTATGTTATATCTGTTGAAAGAATCAAGCAATTCATTCACCTACCATCAGAGCCTCCTGCCATTGTGAAGGACCACCGACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGATTAGATATCGTCCTAATTCTCCATTAGTACTTAAGGGTATCACTTGTATGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTGGGAAGAACGGGAAGTGGAAAAAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGGGGTGATATTCTTATAGATGGGATTAGCATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGAGATATGGAAGGCTTTGGAGAAATGCCAGCTTAAGGAAACTATCAGCCATCTACCAAATCTCTTAGACTCTTTGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGACAACTGTTTTGTCTAGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACTGATGCAATTCTACAAAGAATTATCAGACATGAGTTTGCAGAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAACAGACAGTGACATGGTTATGGTCCTCTCCTATGGGAAAGTGGTGGAATATGATGAACCTTCAAGATTAATGAACACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTCAAATGTTAGTTTGCAGCAACATTGA 2088 0.4071 MTALREKTVILVTHQVEFLSEVDAILVMEGGKVTQSGNYENLLTAGTAFEQLVSAHKEAITELDQNNENKTQREESEGVYLTKNQSEGEISTEGQLGIQLTQEEEKEIGDVGLKTLWDYISFSRGSLMLSWILLAQFAFIAFQTASMVWLALAIEIPKITSATLIGVYSIISFASAAFIYVRSLLTSYLGLKASKAFFTSFNTAIFNAPMLFFDSTPVGRILTRASSDLSVLDFDIPHSITFVAAVAIEILVTICVMVLVTWPVLIVAIPAIVASKYVQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVERFFKTYLKLVDTDASLFFHSNVTMEWLLLRIEALQNLTVITSALLLILFPQGYVSTGLVGLSLSYALTFTASYTFWTRWYCNLLNYVISVERIKQFIHLPSEPPAIVKDHRPPSSWPSKGRIDLQALEIRYRPNSPLVLKGITCMFREGSRVGVVGRTGSGKSTLISALFRLVEPARGDILIDGISICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRHEFAECTVITVAHRVPTVTDSDMVMVLSYGKVVEYDEPSRLMNTNSSFSKLVAEYWASCSKNSSSNVSLQQH* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1456 695 Coils Coil 53 73 - -
Pvu10g1456 695 CDD ABCC_MRP_domain2 441 661 - -
Pvu10g1456 695 SMART AAA_5 469 662 IPR003593 -
Pvu10g1456 695 Pfam ABC transporter transmembrane region 149 392 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1456 695 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 131 393 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1456 695 SUPERFAMILY ABC transporter transmembrane region 116 425 IPR036640 GO:0005524|GO:0016021
Pvu10g1456 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 676 IPR027417 -
Pvu10g1456 695 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 1 682 - -
Pvu10g1456 695 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 682 - -
Pvu10g1456 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 54 IPR027417 -
Pvu10g1456 695 Gene3D - 426 677 IPR027417 -
Pvu10g1456 695 CDD ABC_6TM_ABCC_D2 125 418 IPR044726 GO:0140359
Pvu10g1456 695 Gene3D ABC transporter type 1, transmembrane domain 96 424 IPR036640 GO:0005524|GO:0016021
Pvu10g1456 695 Pfam ABC transporter 460 608 IPR003439 GO:0005524
Pvu10g1456 695 Gene3D - 1 82 IPR027417 -
Pvu10g1456 695 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 445 677 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1456 Pvu-Chr10 41227980 41231649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1456 430 675 Calmodulin-binding Proteins AT2G36910 31.801 5.52e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1456 - - pvu:PHAVU_010G140300g 1328.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1456 10 41227980 41231649 Pvu10g1456 10 41227980 41231649 ECH