Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1453 ATGGCTCAGCCGCCCTTCGATCCGTACTACATGTACCAACAAGATGATCGGAGCAACATCAACACGCTCTTCGTGTCGGGGCTCCCGGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTTCGCCGCCGCCCCGGCTTCGACTCTTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTGGCGTTTGCCACATTTTTCAACCACCAATCGGCAATGGCAGCGCTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTGCATATTGAACTAGCCAGGTCAAACTCTAGGAGAAAGCGAAAACCAGGCAGTGGAGCCTATGTGGTTATAGATAAAAGGACCAAAGGGGAGCTTGATGTTCATGGATCATCAAGTGATGATGGTGACAGTGACCCTGATGAGCCATCAGACAGTGACGGCAACCATGGTGATTTATCAATCATAGCAAGTGATGAGACGGCTGTTGGTTCGGACAATCCTATACCCGTGGAGCAACATGAAAAGGGCAGTTCCGGTGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGCCCAAACTGCACTGAAGATGAATTAAAGCAGGCTTTTGCTGCATATGCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCGTGGAGGAGCTTCAGGGAAGTTTGCTTTCATCATCAGATCGGGGTGGCATGCATATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 795 0.4931 MAQPPFDPYYMYQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGSGAYVVIDKRTKGELDVHGSSSDDGDSDPDEPSDSDGNHGDLSIIASDETAVGSDNPIPVEQHEKGSSGGLCSTLFIANLGPNCTEDELKQAFAAYAGFNMVKMRSRGGMPVAFADFEEIDQAAKVVEELQGSLLSSSDRGGMHIEYARSKMRKH* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1453 264 SUPERFAMILY RNA-binding domain, RBD 21 244 IPR035979 GO:0003676
Pvu10g1453 264 MobiDBLite consensus disorder prediction 124 151 - -
Pvu10g1453 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Pvu10g1453 264 CDD RRM_scw1_like 181 258 - -
Pvu10g1453 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 253 - -
Pvu10g1453 264 Gene3D - 16 103 IPR012677 -
Pvu10g1453 264 CDD RRM_RBPMS_like 21 96 - -
Pvu10g1453 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Pvu10g1453 264 PANTHER RNA-BINDING PROTEIN-RELATED 11 253 - -
Pvu10g1453 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Pvu10g1453 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Pvu10g1453 264 Gene3D - 180 264 IPR012677 -
Pvu10g1453 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Pvu10g1453 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 244 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1453 Pvu-Chr10 41199448 41203037 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1453 - - gmx:100783764 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1453 10 41199448 41203037 Pvu10g1453 10 41199448 41203037 ECH