LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g1450	ATGGAGTTTCAAGAGACGCGTGTATCTCTGAGATCGGGCTTGACGTTCGGAGAGACGCTGTGTGCGGTGTGCATTCCGCTCATCGGAATTGTTGAAGCTTTGGTTTTCAGCTTAACTGGTTGCTTCGATTTCCATTCTCCGGCAAAGAACAAGAAGCCCTCTTCTGCTACCTTCAACGACATTCTCGCCCTCGCCAAGGACTCTCCGTTTACTGTTAATGAGATTGAGGCTTTGCATGAGTTGTTCAAGAAGTTGAGTAGCTCTATCATTGACGATGGCCTCATCCACAAGGAAGAACTCACATTGGCACTGTTGAAGACCACAACTGGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTTTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAATATCTTTCATCCTTGTACTCCTCCGGAAAAGAAAATTGACTTTTCTTTTAAACTGTATGACTTGAGACAGACTGGATATATTGAGCAAGAAGAAGTTAGGCAAATGGTTGTTGCCATTTTGTCAGAATATGGGATGGACCTGGAAGATGAAGCTCTTGATGTCATTATTGATAAGACATTTCAAGAGGCCGATGCTGATAGAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCACTCGACACCCAACACTCTTGAAGCACATGACTCTTCCTCATCTGGCGGACATCAGCACACTGTTTACCAGTTTCATTTTCAACACCGAAGTTGATGATTCTCACTGGCAAATTAATGGCAATCATAAACATTGA	795	0.4239	MEFQETRVSLRSGLTFGETLCAVCIPLIGIVEALVFSLTGCFDFHSPAKNKKPSSATFNDILALAKDSPFTVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTTTGENLFLDRVFDVFDEKRNGVIEFEEFVHALNIFHPCTPPEKKIDFSFKLYDLRQTGYIEQEEVRQMVVAILSEYGMDLEDEALDVIIDKTFQEADADRDDKISKEEWKAFVTRHPTLLKHMTLPHLADISTLFTSFIFNTEVDDSHWQINGNHKH*	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g1450	264	ProSitePatterns	EF-hand calcium-binding domain.	204	216	IPR018247	-
	Pvu10g1450	264	ProSiteProfiles	EF-hand calcium-binding domain profile.	147	182	IPR002048	GO:0005509
	Pvu10g1450	264	SUPERFAMILY	EF-hand	64	243	IPR011992	-
	Pvu10g1450	264	ProSiteProfiles	EF-hand calcium-binding domain profile.	110	145	IPR002048	GO:0005509
	Pvu10g1450	264	CDD	EFh	151	221	IPR002048	GO:0005509
	Pvu10g1450	264	PANTHER	CALCINEURIN B	3	253	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Pvu10g1450	264	SMART	efh_1	114	142	IPR002048	GO:0005509
	Pvu10g1450	264	SMART	efh_1	151	179	IPR002048	GO:0005509
	Pvu10g1450	264	SMART	efh_1	195	223	IPR002048	GO:0005509
	Pvu10g1450	264	ProSiteProfiles	EF-hand calcium-binding domain profile.	191	226	IPR002048	GO:0005509
	Pvu10g1450	264	Pfam	EF-hand domain pair	92	138	IPR002048	GO:0005509
	Pvu10g1450	264	Gene3D	-	62	254	-	-
	Pvu10g1450	264	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	3	253	-	-
	Pvu10g1450	264	Pfam	EF-hand domain pair	150	219	IPR002048	GO:0005509
	Pvu10g1450	264	PRINTS	Recoverin family signature	118	139	-	-
	Pvu10g1450	264	PRINTS	Recoverin family signature	165	183	-	-
	Pvu10g1450	264	PRINTS	Recoverin family signature	211	231	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g1450	Pvu-Chr10	41180802	41184172	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g1450	31	254	EF-hand Containing Proteins	AT5G55990	55.357	7.48e-85	251

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g1450	K06268		-	gmx:100801943	454.136