Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1440 ATGTATCGATTAGCTCGTAGAGTAGCTTCTTCCTCCGCCAAGAACCTCGTATATGGTAGGGTGTTGTCAAGCAGAAATTTTGTGAGCAAGGATATCAACTTTGGGGTTGGGGCTCGTGCTGCAATCCTCCAAGGTGTAACTCAGGTTGCTGATGCTGTGAAAGTAACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAGAAGCCGTGGGAATCCCAGGATCACGAAGGATGGTGTGACTGTGGCTAAAAGTATCAAATTTAATGACAAAGCCAAAAATGTCGGTGCTGATCTTGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCTGGCGTAAATGTTATGGATTTACGAAGTGGAATAAATAAGGCAGTTGATGCTGTAATTACTGACTTGAAAAGCAGAGCATTGATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAGGGAGTCATTACTGTTGCTGACGGGAATACTTTGGATAACGAGTTGGAAGTGGTAGAAGGAATGAAGCTAACCAGAGGCTACATATCTCCTTATTTTATTACTGACCAGAAGACCCGCAAATGTGAATTGGAGAACCCCTTCATTCTCATCCATGACAAGAAAATTTCAGACATGAATTCACTGCTGAAAACACTGGAGCTTGCAGTAACGAATAAAAGACCACTCCTAGTTGTTGCTGAAGATGTAGAGAGTGATGCATTGGCTATGCTCATACTCAACAAGCATCGTGCTGGGCTTAAGGTTTGTGCTGTGAAAGCTCCTGGTTTTGGGGATAGTAGAAGGGCAAATCTAGATGATCTTGCAACTCTTACTGGAGGAGAGGTCATCACTGAAGAGCGTGGTTTGTCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACTGTCACCGTTGATGACACTATTGTTCTACATGGTGGTGGGGATAAGAAGGCCATTGAAGAGAGATGTGAACAGCTAAGGACAGCTATGGAAAACAGTTCTGCCATGTTTGATAAAGAAAAAACACAGGAACGGCTTTCAAAACTATCGGGCGGTGTTGCTGTTTTCAAAGTTGGAGGGGCTAGTGAGGTTGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCTGCTGTCGAAGAGGGAATTGTTCCAGGTGGTGGAGTCGCTCTCTTATACGCTACCAAAGTCTTGGATAACCTTCAAACTCAAAATGAAGATGAAAAAAGAGGAGTACAGATTATTCAGAATGCACTCAAGGCGCCTACATTTACAATAGCTTCCAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTATTGGAACAAGATGATCATAATTTAGGTTTTGATGCCGCTAAAGGTATCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCAGCCAGTGTTTCATTGCTACTGACAACAACCGAGGCAACTGTGGTGGAGAATCATGACAAATATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGACCTCTAA 1710 0.4322 MYRLARRVASSSAKNLVYGRVLSSRNFVSKDINFGVGARAAILQGVTQVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFNDKAKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRSGINKAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELENPFILIHDKKISDMNSLLKTLELAVTNKRPLLVVAEDVESDALAMLILNKHRAGLKVCAVKAPGFGDSRRANLDDLATLTGGEVITEERGLSLDKVQPEMLGTAKKVTVTVDDTIVLHGGGDKKAIEERCEQLRTAMENSSAMFDKEKTQERLSKLSGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKVLDNLQTQNEDEKRGVQIIQNALKAPTFTIASNAGFDGALVHSKLLEQDDHNLGFDAAKGIYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEATVVENHDKYKPPSRVPDMDDLDL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1440 569 Hamap Chaperonin GroEL [groEL]. 28 567 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 20 554 - -
Pvu10g1440 569 SUPERFAMILY GroEL-intermediate domain like 164 230 IPR027410 -
Pvu10g1440 569 Pfam TCP-1/cpn60 chaperonin family 49 550 IPR002423 GO:0005524
Pvu10g1440 569 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 20 554 - -
Pvu10g1440 569 Coils Coil 365 385 - -
Pvu10g1440 569 Gene3D GroEL 218 399 IPR027409 -
Pvu10g1440 569 Gene3D - 163 436 IPR027410 -
Pvu10g1440 569 TIGRFAM GroEL: chaperonin GroL 29 553 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 Coils Coil 452 472 - -
Pvu10g1440 569 SUPERFAMILY GroEL equatorial domain-like 33 548 IPR027413 -
Pvu10g1440 569 PRINTS 60kDa chaperonin signature 53 79 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 PRINTS 60kDa chaperonin signature 109 136 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 PRINTS 60kDa chaperonin signature 294 317 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 PRINTS 60kDa chaperonin signature 376 401 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 PRINTS 60kDa chaperonin signature 424 445 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 SUPERFAMILY GroEL apical domain-like 210 402 IPR027409 -
Pvu10g1440 569 ProSitePatterns Chaperonins cpn60 signature. 431 442 IPR018370 GO:0005524|GO:0006457
Pvu10g1440 569 CDD GroEL 30 550 IPR001844 GO:0042026|GO:0140662
Pvu10g1440 569 Gene3D - 32 549 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1440 Pvu-Chr10 41074261 41080723 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1440 K04077 - gmx:100778935 1001.89