Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1423 ATGGCATCTCAAGGTTTGTGTCCTTTGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCGACAAACCATTCAAAGTTAGCTTTTGAGAAGTTTGTATTTAGTAAGACTTTTAAGACAAATGCTCGAACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTCTTTGTTACTGGTGGTGATGATGAAAATGAGCTCATTTTAGCATCGGTACTTCAAGGTTTCTTTGATGCAGTCACCCTTCTATTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTATTGTGTCTTGATGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCGCCCTTGTCAGAGCAGACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA 543 0.3923 MASQGLCPLIKNILLLDSEGKRVAVKYYSDDWPTNHSKLAFEKFVFSKTFKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1423 180 Gene3D - 5 150 - -
Pvu10g1423 180 PANTHER CLATHRIN ADAPTOR COMPLEX SMALL CHAIN 5 180 - -
Pvu10g1423 180 CDD Zeta-COP 11 146 - -
Pvu10g1423 180 Pfam Clathrin adaptor complex small chain 10 149 IPR022775 -
Pvu10g1423 180 SUPERFAMILY SNARE-like 10 151 IPR011012 -
Pvu10g1423 180 PANTHER ZETA-COAT PROTEIN 5 180 IPR039652 GO:0006890|GO:0030126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1423 Pvu-Chr10 40940710 40944248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1423 K20472 - gmx:547466 331.257