Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1408 ATGTTTCTCTTTGACAAGAGCCAGAAGATCAAGGGTACTGTGGTGTTGATGCCAAAGAATGTGTTGGACGCCAACGAGTTAACTGCAGTGCAGAATGGAGGACTTGGTGGTGTTGTCTCTGGTTTCTTCGACGCCGTCGCCGACGTAGCAGGACAAGCAGTTGATACTGCAACTGCCATCTTAGCCCGTAATGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAATGGAAACGGGAAAGTTGGAAAGGAAACGTACCTAGAGAAGCATGTTCCAACGCTACCAACCTTTGGAAACAGACGAGATGCATTCAATGTTCATTTTGAATGGGATGCTAATTTTGGAATTCCTGGTGCATTTTACATCAGAAACTTTATGAATGATGAGTTCTTCCTCGTCAGTGTCACTCTCGAAGACATTCCAAATCACGCAACCATTCATTTTGTCTGCAACTCGTGGGTCTACAACTTTAAAAAATACAAAAAGGATCGTATTTTCTTTGTCAATAATACATATCTGCCAAGTGCAACACCACCTCCACTGGTTAAGTATAGGAAAGAAGAGTTGGAGGTTTTGAGAGGAGATGGAACAGGAGTACGCATGGAATGGGAAAGGATCTATGATTATGATGTGTACAATGATTTGGGGAACCCAGACAGTGATAAAACGCTTGCTCGTCCTGTTCTTGGAGGCTCCAGCACCTATCCCTACCCTCGTAGGGTTAGAACTGGTCGAAAAGCCACCAAAAAAGATCCTAAAAGTGAGAAACTTGCGGGCGACATTTATATGCCAAGAGATGAAAAATTCGGGCATTTGAAGTCCTCAGATTTCCTAACATATGGATTAAAATCCTTGTCTCAACAACTGTTACCTTCTCTGGAAAACGTTTTTGACTCAGATTTGACATGGAACGAATTTGATAGCTTTGAAGAAGTGCGTGCGTTACATGAAGGTGGAATTAAGCTACCAACAGATGCACTTAGCGACTTTAGTCCCTTACCAGTCTTCAGGGAACTTTTCAGATCTGATGGTGAAAATGCCCTTCAGCTTCCACCACCTCATGTTGTGAGAGTTAATAAATCTGCATGGATGACTGATGAGGAATTTGCAAGGGAAATGATTGCTGGTGTAAACCCAAATGTCATTCGTTGTCTTCAAGAGTTCCCTCCAAAAAGCAAGCTAGATCCCACTCTCTATGGTGATCAAACCAGTACTCTAACAACACAAAAGTTGGAAATTAACATGGGTGGGGTCACAGTGGAAGAGGCACTTGCTGCAAAGAGATTATTCATATTAGATTACCAAGATGCATTCATTCCGTATCTGACAAGGATAAACAGTTTACCTACTGCAAAAGCTTATGCCACAAGAACAATCTTATTCTTGAAAGATGATGGCACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAAGTGGAGACAATTTGGGTCCTGTGAGCAAAGTTGTGTTGCCTGCACTTGATGGTGTTGATAGCACGATTTGGCTATTGGCTAAGGCTCATGTAATAGTAAATGACTCTGGTTATCATCAACTCATCAGCCATTGGTTAAAAACTCATGCAGTGATTGAGCCATTTGCCATAGCAACAAACAGGAATCTCAGTGTGATTCACCCCATTTATAAACTTCTTTATCCTCACTATCGGGATACCATTAATATCAATGGACTTGCTAGGCAAAACCTGATTAATGCAAGTGGCATTATAGAACAATCATTTTTGCCTGGAAAGTATTCTATGGAGATATCTTCCATTGCTTACAAGAATTGGATTTTCACTGACCAATCATTGCCAGCTGATCTCATCAAGAGAGGATTGGCAACTGAAGATCCTTCTGCTCCTCATGGCCTTCGTCTTCTCATAGAGGACTACCCTTATGCTATATGGGTTAAAGAGTATGTCTCCTTGTATTACCCCACAGATGTGGCAATTCAACAAGATACTGAACTTCAAGCATGGTGGAAGGAAGCTGTAGAGAAGGGTCATGCTGACTTGAAAGATAAGCCTTGGTGGCCTAAAATGAAGACTGTTCAAGAGCTTATTCAATCATGCTCCACCATCATATGGATTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAATACCCTTATGGAGGTTTTATCCTGAACCGTCCAACTCTGAGCAGAAGATTCATCCCAGAGGCAGGAACCAAAGAATATGATGAAATGGTGAAGAGTCCTCAGACTGCATATTTGAGAACCATTACACCAAAGCGTGAGGCCATTATTGATCTTACAGTGATAGAGATATTGTCAAGGCATGCCTCTGATGAGATCTACCTTGGGGAGAGAGATAATCCAAATTGGACATCTGATTCAAAGGCATTAGAAGCATTCAAAAGGTTTGGAAGCAAGTTGACAGAAATTGAAGGAAAAATCACAGCAAGAAACACCAATTCAACTATGAAAAACCGATATGGACCAGTTCAACTTCCATACACATTGCTCATTCCTACAAGTGAGGAAGGGTTGACTTTCAGAGGAATCCCCAATAGTGTCTCTATCTAG 2565 0.4179 MFLFDKSQKIKGTVVLMPKNVLDANELTAVQNGGLGGVVSGFFDAVADVAGQAVDTATAILARNVSFKLISATSTDANGNGKVGKETYLEKHVPTLPTFGNRRDAFNVHFEWDANFGIPGAFYIRNFMNDEFFLVSVTLEDIPNHATIHFVCNSWVYNFKKYKKDRIFFVNNTYLPSATPPPLVKYRKEELEVLRGDGTGVRMEWERIYDYDVYNDLGNPDSDKTLARPVLGGSSTYPYPRRVRTGRKATKKDPKSEKLAGDIYMPRDEKFGHLKSSDFLTYGLKSLSQQLLPSLENVFDSDLTWNEFDSFEEVRALHEGGIKLPTDALSDFSPLPVFRELFRSDGENALQLPPPHVVRVNKSAWMTDEEFAREMIAGVNPNVIRCLQEFPPKSKLDPTLYGDQTSTLTTQKLEINMGGVTVEEALAAKRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPSGDNLGPVSKVVLPALDGVDSTIWLLAKAHVIVNDSGYHQLISHWLKTHAVIEPFAIATNRNLSVIHPIYKLLYPHYRDTININGLARQNLINASGIIEQSFLPGKYSMEISSIAYKNWIFTDQSLPADLIKRGLATEDPSAPHGLRLLIEDYPYAIWVKEYVSLYYPTDVAIQQDTELQAWWKEAVEKGHADLKDKPWWPKMKTVQELIQSCSTIIWIASALHAAVNFGQYPYGGFILNRPTLSRRFIPEAGTKEYDEMVKSPQTAYLRTITPKREAIIDLTVIEILSRHASDEIYLGERDNPNWTSDSKALEAFKRFGSKLTEIEGKITARNTNSTMKNRYGPVQLPYTLLIPTSEEGLTFRGIPNSVSI* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1408 854 Gene3D - 364 498 - -
Pvu10g1408 854 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Pvu10g1408 854 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Pvu10g1408 854 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Pvu10g1408 854 ProSiteProfiles PLAT domain profile. 42 170 IPR001024 GO:0005515
Pvu10g1408 854 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 173 854 IPR013819 GO:0016702|GO:0046872
Pvu10g1408 854 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 3 854 - -
Pvu10g1408 854 Pfam Lipoxygenase 183 837 IPR013819 GO:0016702|GO:0046872
Pvu10g1408 854 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Pvu10g1408 854 SMART LH2_4 8 171 IPR001024 GO:0005515
Pvu10g1408 854 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 174 IPR036392 GO:0005515
Pvu10g1408 854 Gene3D - 175 274 - -
Pvu10g1408 854 Gene3D - 275 363 IPR027433 -
Pvu10g1408 854 CDD PLAT_LH2 9 171 IPR042057 -
Pvu10g1408 854 PANTHER LIPOXYGENASE 3 854 IPR000907 GO:0016702|GO:0046872
Pvu10g1408 854 SUPERFAMILY Lipoxigenase 175 854 IPR036226 -
Pvu10g1408 854 Gene3D PLAT/LH2 domain 1 174 - -
Pvu10g1408 854 Gene3D - 499 853 - -
Pvu10g1408 854 Pfam PLAT/LH2 domain 74 169 IPR001024 GO:0005515
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 140 158 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 166 187 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 205 221 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 238 257 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Pvu10g1408 854 PRINTS Plant lipoxygenase signature 767 781 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1408 Pvu-Chr10 40790486 40795792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1408 7 854 Acyl Lipid Metabolism Gene Families AT1G55020 54.650 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1408 K15718 - gmx:100781402 1478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1408 10 40790486 40795792 Pvu5g1617 5 38277895 38281683 PCT