Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1403 ATGTTTAAGGGCAATACCTCAAAGGTTCACCAAGTGAAGGGGACAGTGGTTTTGATGAGCAAGAATGCATTGGACTTCAACAAAGATGGTGCCACTGCCATCTTCAGCCCTGACTTTTCCATAAAGCTTATCAGTTCTAACAGGGTTGATGGGCATAAGAATGGGAAGGTTGGAAAGGAAACCTCTCGGGACAAAAATCAACCTGCTTCTTCGTTACCAACCTTGGGAGAGGGAAAAACTGCATTCAATATTTCTTTTAAATTGGATGAAAGTTTTGGAATTCCAGGAGCATTCTACATCAAAAATTTAAAGCAACCTGAGTTTTTCCTTGTGACTCTCACTCTTGACATTCCAGATCATGGAACCATTCACTTTGTTTGCAACTCATGGGTTTACAAAGCACAGAAGGATCGTATTTTCTTTGCAAACAAGACGTATCTTCCAGATACAACTCCAACTGCTTTTAAAAAGTACAGAGAAGATGAATTGAAAAGTCTGAGAGGAGAGGGAAAAGAAAAAGGAAAGCGCCAAGAACATGAAAGGATTTATGATTATGATGTGTATAATGATTTGGGCAACCCAGACAAGAGTGATGATCTAGCTCGTCCTGTTCTTGGAGATTCTAGTGCCTATCCATACCCTCGCAGGGGAAGAACTGGAAGAGACAAAACAAAAAAAGACCCTAAGAGTGAGACACCAGCCAGCGGCGACACTTACATTCCAAGAGATGAAAAAATTGGTCACTTGAAGTCATCAGACTTTCTTACAAATGGAATAAAGTCCTTGGCTCAAAATGTCTTACCTCAATTTCAATCTGCAATTGCTTTAGATCCTGAGTTTGATAACTTTAATGACGTTCGTGGACTCTTCAAAGATGGACTTCCTCTTCTTACAGACGCAATCAGAACAATTAGCCAAACACCAGTGATAAAGGAAATCTTCCAGATTGATGGTGAAAAAGTCAAGTTTCCACCACCTCATGTCATCCAAAATGGTGAGTCATGGATGACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTTCATCCTTGCCGAATTCAGCGTCTTCAAGAGTTCCCTCCAACGAGCAAGCTAGATGCTTCTGTGTATGGTGATCAAACTAGCAAAATTACCAAAAAAAATTTGCAGATCAACCTTGGTAAACTCACCGTGGAAAAGGCATTGAAAGATAACCGATTGTTCATATTAGATTACCATGATGCATTCTTACCATTTCTGAGGAAGATCAATGGCCTACCCAACACAAAGTGTTATGCCACAAGGACAATCCTTTTCTTGAAAGATGATGGCACATTGAAGCCATTGGCTATTGAATTAAGTCTACCACATGCTGAGGGAGATAGGTGTGGTGCTAATAGTAGAGTTATCTTGCCTGCACACCAAGGCGCTGAAAGAACAATTTGGCAATTGTCCAAGGCTTATGTTGTTGTAAATGACTCATGTTATCATCAACTTGTGAGCCACTGGTTAAACACTCATGCCATAATGGAGCCATTTGTCATAGCAACAAATAGGCATCTCAGTGTGCTCCACCCTATTCATAAACTTCTATCACCACACTATCGTGACACCATGAATGTTAATGGAGTTGCACGACAATCACTTATCAACGCAGGTGGCCTTATTGAGCAATCCTTTTTGCCTGGAAAATACGCTTTGGAAATGTCTTCAGCAGCTTACAAGAATTGGGTTTTCACTGATCAAGCCCTTCCTGAAGATCTCGTCAAGAGAGGAATGGCAGTTAAGGATTCATCAAATCTCCTTCAACTTGTGATAAAGGACTACCCTTATGCTGTTGATGGACTAAAGATATGGAGTGCTATTCTGAATTGGGTTACAAAGTATGTCTCCTTCTACTATTCAGATAGAGTTGGGGAAGACAGAGAACTCGAGTCTTGGTGGAAGGAGGTAGTTAAGGAGGGTCACGGTGACTTGAAAGACAAGCCATGGTGGCCAACAAAGTTGAACACTCGTCAAAATCTGATTCACATTTGCAGCACTATCATATGGATTGCTTCAGCTCAACATGCAGCTGTTAATTTTGGACAATACCCTTATGGAGATCACATCCTAAACCGTCCAACTCTAACCAGAAGATTGATCCCAGACCCAGGAACCAAAGAATATAATGAGCTGAGCACCAATCATGAAAAGGCTTATCTGAAAACAATTACAAAAAAACATGAGGCCCTTGTGAACCTTTCAGTGATAGCGATATTGTCAAGACATGCTTCTGATGAGGTCTATCTTGGACAGAGGGACAATCCAAATTGGACTGATGATGAAAAGGTTCTTAAAGCCTTTAAACATTTTGGAGGAGAACTGAAAAAAATTGAGAATGAGATCTTAGAAAGGAACAACAATTCAAGTCTCAGAAACCGTGTTAAGATGCCCTACACTGTGCTTCTTCCTACCAGTGAGGAAGGTCTCACTTTCAGAGGAATCCCCAACAGCATCTCTATTTAA 2490 0.408 MFKGNTSKVHQVKGTVVLMSKNALDFNKDGATAIFSPDFSIKLISSNRVDGHKNGKVGKETSRDKNQPASSLPTLGEGKTAFNISFKLDESFGIPGAFYIKNLKQPEFFLVTLTLDIPDHGTIHFVCNSWVYKAQKDRIFFANKTYLPDTTPTAFKKYREDELKSLRGEGKEKGKRQEHERIYDYDVYNDLGNPDKSDDLARPVLGDSSAYPYPRRGRTGRDKTKKDPKSETPASGDTYIPRDEKIGHLKSSDFLTNGIKSLAQNVLPQFQSAIALDPEFDNFNDVRGLFKDGLPLLTDAIRTISQTPVIKEIFQIDGEKVKFPPPHVIQNGESWMTDEEFGREMLAGVHPCRIQRLQEFPPTSKLDASVYGDQTSKITKKNLQINLGKLTVEKALKDNRLFILDYHDAFLPFLRKINGLPNTKCYATRTILFLKDDGTLKPLAIELSLPHAEGDRCGANSRVILPAHQGAERTIWQLSKAYVVVNDSCYHQLVSHWLNTHAIMEPFVIATNRHLSVLHPIHKLLSPHYRDTMNVNGVARQSLINAGGLIEQSFLPGKYALEMSSAAYKNWVFTDQALPEDLVKRGMAVKDSSNLLQLVIKDYPYAVDGLKIWSAILNWVTKYVSFYYSDRVGEDRELESWWKEVVKEGHGDLKDKPWWPTKLNTRQNLIHICSTIIWIASAQHAAVNFGQYPYGDHILNRPTLTRRLIPDPGTKEYNELSTNHEKAYLKTITKKHEALVNLSVIAILSRHASDEVYLGQRDNPNWTDDEKVLKAFKHFGGELKKIENEILERNNNSSLRNRVKMPYTVLLPTSEEGLTFRGIPNSISI* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1403 829 MobiDBLite consensus disorder prediction 187 202 - -
Pvu10g1403 829 ProSiteProfiles PLAT domain profile. 12 145 IPR001024 GO:0005515
Pvu10g1403 829 PRINTS Lipoxygenase signature 473 490 IPR013819 GO:0016702|GO:0046872
Pvu10g1403 829 PRINTS Lipoxygenase signature 491 508 IPR013819 GO:0016702|GO:0046872
Pvu10g1403 829 PRINTS Lipoxygenase signature 511 531 IPR013819 GO:0016702|GO:0046872
Pvu10g1403 829 SMART LH2_4 10 143 IPR001024 GO:0005515
Pvu10g1403 829 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 146 IPR036392 GO:0005515
Pvu10g1403 829 SUPERFAMILY Lipoxigenase 148 829 IPR036226 -
Pvu10g1403 829 MobiDBLite consensus disorder prediction 187 243 - -
Pvu10g1403 829 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 145 829 IPR013819 GO:0016702|GO:0046872
Pvu10g1403 829 Gene3D - 250 333 IPR027433 -
Pvu10g1403 829 Pfam Lipoxygenase 155 812 IPR013819 GO:0016702|GO:0046872
Pvu10g1403 829 Gene3D - 334 468 - -
Pvu10g1403 829 Gene3D - 469 828 - -
Pvu10g1403 829 ProSitePatterns Lipoxygenases iron-binding region signature 1. 491 505 IPR020833 GO:0016702|GO:0046872
Pvu10g1403 829 PANTHER LIPOXYGENASE 28 829 - -
Pvu10g1403 829 ProSitePatterns Lipoxygenases iron-binding region signature 2. 518 528 IPR020834 GO:0016702|GO:0046872
Pvu10g1403 829 Gene3D PLAT/LH2 domain 1 146 - -
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 115 133 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 138 159 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 179 195 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 212 231 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 277 298 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 321 337 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 359 378 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 426 450 IPR001246 GO:0016491
Pvu10g1403 829 PRINTS Plant lipoxygenase signature 745 759 IPR001246 GO:0016491
Pvu10g1403 829 Pfam PLAT/LH2 domain 54 141 IPR001024 GO:0005515
Pvu10g1403 829 MobiDBLite consensus disorder prediction 52 74 - -
Pvu10g1403 829 PANTHER LIPOXYGENASE 28 829 IPR000907 GO:0016702|GO:0046872
Pvu10g1403 829 MobiDBLite consensus disorder prediction 216 232 - -
Pvu10g1403 829 Gene3D - 147 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1403 Pvu-Chr10 40709668 40716846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1403 4 829 Acyl Lipid Metabolism Gene Families AT1G55020 52.275 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1403 K15718 - gmx:100127399 1192.95