Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1400 ATGAGAAGGTTGTTCCACAGACGCAAGAAGCTGAAGGGGAGGGTGGTGCTGATGCACAAGAATCTGTTGGACGCAAAAAACGTAAGCACTGTGAGAGGAGTTGTTGACACTTCCAGATGCATACTTAGTTCAACATTGATTGATACTCTCAGTGCCTTCTCCAATCGATGTGTGTCTATCCGCTTAATCAGTGCTACCAGGGCTGCTGTTGGAAAGAAGGCATATTTGAAAGGTGTTTTTACCACTATACCAACCTTGGAACCGGAGGAATGTGAATTTGATGTTTATTTTGATTGGGACGTTGAGGAGATGGGAATTCCTGGAGCATTTACCATAAAAAATCATCTGACAGTTGAGTTCTTTCTGGTGAGTTTGACTCTTGAAGATGTTCCCACTCGTGAAGAACCAATGCACTTTGTTTGCAACTCATGGGTTTACAATCATTTTGTTTACACAGAGGATCGAATCTTCTTTTCCAATGAGACATATGTGCCAAATGAAACACCAGTACCACTAGTGAACTACAGAGAAGAAGAGTTGCAGATTCTGAGAGGAAATGGAAAAGGGAAACTCAAACAGTATCATAGAGTTTACGATTACGATGTTTACAATGATTTGGGCAATCCTCACACAAGTGGACACTTAGCTCGCCAAGTTCTTGGAGGATCTGACACTCATCCCTACCCTCGTAGAGGAAGAACAGGAAGAAAACCCACAATAGAAGATTGTAACAGTGAGAGACCAGGCCATAGAATTTATGTTCCAAGAGATGAACATTTTGGTCACTTGAAATCATCTGAATTCCTTTCTTCTGTGATAAAATCTTCAGCACGAAAAGTGTTGCATCTTCATAAACCTCTACTTGATTCAATTACTTCAAAGGAGGAGTTTAATAGCTTTGATGAAGTACATAAACTCTTTGATGTACATGAACTCTGTGAAGGTGGATTTGAGCACTCTTTTCCTGTACCTCATGTAATTAGAGTGAGTAAATCTGCATGGATGACTGATGAAGAATTTGCAAGGGAGATGCTTGCTGGTGCAAACCCTTGCACGATTCGTTGTCTACAAAAGTTCCCACCACAAAGCAAGTTGGATAGCTCGGTCCATGGTGATCAAACAAGTAAAATGACTGAACAACAGTTGGAGATTAACCTCGAAGGGCTCACAGTAGATAAGGCAATTAAATGTCGTAGACTATTCATACTAGATTACCATGACGTATTTATGTCGTTTTTGGGAAGGATAAATGAAGATACACCAAAGGCTTATGCCACTAGGACAATCCTTTTCTTGAAAGATGATGGGACCTTAAAGCCATTGGCCATCGAATTAAGTTTATCACAACATTCAAGTGGACAAGTTGGTGCCCTTAGTAAAGTCGTCTTGCCTGCAGAGAAAGGGGTGGAAAATACAATTTGGCTATTGGCTAAGGCACATGTTATCGTGAATGATTCGTGCTATCATCAGCTCATAAGTCACTGGTTGAATACTCATGCCGTGATTGAACCCTTTATCATAGCAACAAACAGGAATCTCAGTGTTCTTCACCCTCTTCATAAACTTCTATTTCCTCACTATCGTGACACAATGAATATCAATGCACTTGCTCGACAATCACTAATTAATGCTGATGGCACTATAGAGCAATCCTTTTTGAGTGGAAAGTATTCTATGGAGATCTCTTCAGCAATGTACAAAGATTGGGTGTTCCCTGACCAAGCACTACCTGCTGATCTTATCAAAAGAGGAATGGCTATTGAGGATTCATCCTCTCCCAATGGCCTTGGTCTTGTGATAGAGGACTACCCTTTTGCTGTTGATGGACTTGAAATTTGGGATGCTATTAAGATATGGGTCCAAGAGTATGTCTCCTTGTATTACCCCACAGATGTGGCAGTTCAACAAGATACTGAACTCCAAGCATGGTGGAAGGAAGTTGTAGAGAAGGGTCATGCTGACTTAAAAGACAAGCCTTGGTGGCCTAAAATGAAGACTCTTGAAGAGCTTATTCAATCATGTTCCACCATCATATGGATTGCTTCAGCCTTTCATGCAGCGGTTAACTTTGGACAATATCCTTATGGTGGATTTATCCTCAACCGTCCAACTCTTAGCAGAAGATTGATCCCGGAAAAAGGAACACCAGAATATGATGAGATGGAGAAGAATCCTGAAAAGGCTTATCTAAGAACAATTACACCTAAATATGAGACTCTTGTTGACCTTTCAGTGATAGAGATATTATCAAAACATGCTTCAGACGAGGTCTACCTTGGACAGAGGGACAATCCAAATTGGACCTCTAACCGAAGGGCAATAGAAGCCTTTAAAAGGTTTGGAGAAAAGCTATCAGAGATTGAGAAAAATATCTCAGAAAGGAACCATGATCCAAATCTTAAAAATCGAACTGGACCAGCTCATTTGCCTTACACTGTGCTTCTTCCCACCAGTGAAAAGGGATTGACTTTTAGAGGAATTCCAAACAGTGTCTCTATCTAA 2502 0.4073 MRRLFHRRKKLKGRVVLMHKNLLDAKNVSTVRGVVDTSRCILSSTLIDTLSAFSNRCVSIRLISATRAAVGKKAYLKGVFTTIPTLEPEECEFDVYFDWDVEEMGIPGAFTIKNHLTVEFFLVSLTLEDVPTREEPMHFVCNSWVYNHFVYTEDRIFFSNETYVPNETPVPLVNYREEELQILRGNGKGKLKQYHRVYDYDVYNDLGNPHTSGHLARQVLGGSDTHPYPRRGRTGRKPTIEDCNSERPGHRIYVPRDEHFGHLKSSEFLSSVIKSSARKVLHLHKPLLDSITSKEEFNSFDEVHKLFDVHELCEGGFEHSFPVPHVIRVSKSAWMTDEEFAREMLAGANPCTIRCLQKFPPQSKLDSSVHGDQTSKMTEQQLEINLEGLTVDKAIKCRRLFILDYHDVFMSFLGRINEDTPKAYATRTILFLKDDGTLKPLAIELSLSQHSSGQVGALSKVVLPAEKGVENTIWLLAKAHVIVNDSCYHQLISHWLNTHAVIEPFIIATNRNLSVLHPLHKLLFPHYRDTMNINALARQSLINADGTIEQSFLSGKYSMEISSAMYKDWVFPDQALPADLIKRGMAIEDSSSPNGLGLVIEDYPFAVDGLEIWDAIKIWVQEYVSLYYPTDVAVQQDTELQAWWKEVVEKGHADLKDKPWWPKMKTLEELIQSCSTIIWIASAFHAAVNFGQYPYGGFILNRPTLSRRLIPEKGTPEYDEMEKNPEKAYLRTITPKYETLVDLSVIEILSKHASDEVYLGQRDNPNWTSNRRAIEAFKRFGEKLSEIEKNISERNHDPNLKNRTGPAHLPYTVLLPTSEKGLTFRGIPNSVSI* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1400 833 Gene3D - 164 263 - -
Pvu10g1400 833 PANTHER LIPOXYGENASE 1 833 IPR000907 GO:0016702|GO:0046872
Pvu10g1400 833 Gene3D - 486 831 - -
Pvu10g1400 833 Pfam PLAT/LH2 domain 70 158 IPR001024 GO:0005515
Pvu10g1400 833 Pfam Lipoxygenase 320 816 IPR013819 GO:0016702|GO:0046872
Pvu10g1400 833 Pfam Lipoxygenase 172 309 IPR013819 GO:0016702|GO:0046872
Pvu10g1400 833 Gene3D - 314 350 IPR027433 -
Pvu10g1400 833 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 162 833 IPR013819 GO:0016702|GO:0046872
Pvu10g1400 833 Gene3D - 351 485 - -
Pvu10g1400 833 Gene3D - 264 313 IPR027433 -
Pvu10g1400 833 ProSiteProfiles PLAT domain profile. 35 159 IPR001024 GO:0005515
Pvu10g1400 833 PRINTS Plant lipoxygenase signature 129 147 IPR001246 GO:0016491
Pvu10g1400 833 PRINTS Plant lipoxygenase signature 155 176 IPR001246 GO:0016491
Pvu10g1400 833 PRINTS Plant lipoxygenase signature 194 210 IPR001246 GO:0016491
Pvu10g1400 833 PRINTS Plant lipoxygenase signature 319 335 IPR001246 GO:0016491
Pvu10g1400 833 PRINTS Plant lipoxygenase signature 358 377 IPR001246 GO:0016491
Pvu10g1400 833 PRINTS Plant lipoxygenase signature 424 448 IPR001246 GO:0016491
Pvu10g1400 833 PRINTS Plant lipoxygenase signature 746 760 IPR001246 GO:0016491
Pvu10g1400 833 ProSitePatterns Lipoxygenases iron-binding region signature 1. 489 503 IPR020833 GO:0016702|GO:0046872
Pvu10g1400 833 ProSitePatterns Lipoxygenases iron-binding region signature 2. 516 526 IPR020834 GO:0016702|GO:0046872
Pvu10g1400 833 MobiDBLite consensus disorder prediction 218 243 - -
Pvu10g1400 833 SMART LH2_4 9 160 IPR001024 GO:0005515
Pvu10g1400 833 Gene3D PLAT/LH2 domain 1 163 - -
Pvu10g1400 833 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 163 IPR036392 GO:0005515
Pvu10g1400 833 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 833 - -
Pvu10g1400 833 SUPERFAMILY Lipoxigenase 165 833 IPR036226 -
Pvu10g1400 833 MobiDBLite consensus disorder prediction 229 243 - -
Pvu10g1400 833 PRINTS Lipoxygenase signature 471 488 IPR013819 GO:0016702|GO:0046872
Pvu10g1400 833 PRINTS Lipoxygenase signature 489 506 IPR013819 GO:0016702|GO:0046872
Pvu10g1400 833 PRINTS Lipoxygenase signature 509 529 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1400 Pvu-Chr10 40660168 40664530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1400 9 833 Acyl Lipid Metabolism Gene Families AT1G55020 53.526 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1400 K15718 - gmx:547694 1215.68