Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1399 ATGGCATCGCATTTACTCAATCACTCCGCCAAGGTGAGAAATGCTTCGAAGTTGCTGCACCACGAGCGCGCTCTCCTGGCTCGTTGGTTTTCCGGCGATGTTCAATCCTCTCTCAATAGGAACCGCGATGTGTGGAAAACTCAGCTCCCCGAGTCTTCAACAAGAAGCGGTGTCTTTGTACCGGCCTCCGGCTATACTAAGAGAAACATCTCCATGGCTAGCATTAAAAGGGGTTCCATTATGGGGTCAGGGTTCAGTGGAGAGATTTCGCAAAGTCCACAGGTGTTGTCAAGGAGATGCTATGCGTCAGCCTCAGATCTACCCCCCCACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGGGTAACATTGCGAGATGGTTGAAGAAAGAAGGTGATAAAGTTTCTCCTGGTGAAGTGCTCTGTGAAGTTGAGACTGATAAAGCTACTGTTGAAATGGAAAGTATGGAAGAAGGTTATCTGGCCAAGATAGTCCGAGGAGATGGGGAAAAAGAAATTCAAGTTGGTGAGGTAATTGCCATAACTGTTGAAGATGAGGGGGATATTGCCAAGTTTAAAGATTACAAACCTTCAGCATCTGAACCAAGTGCACCTCCTGCCAAAGAAGCATCTGCACCATCCCCACCAAAGAAGGAAGTGGCAGAGGAGCCTGCTCGAGAACCTGAATCAAAGGTTTCCAAACCTAGTGCGCCAACTTCATCTGGAGATCGCATATTTGCTAGCCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAACGTACCTCTCTCTAGCATTAAAGGAACAGGACATGAAGGACTCATTGTGAAGGCAGATATTGAAGACTTCTTGGCTTCTGGTCAAGTTTCTGCACCCTCAAAGGCCAAGGACCCAACAGATGCAGCTTTGGATTATATTGACATTCCTGTCTCTCAGATACGGAAGGTTACAGCTTCACGGCTATTATTATCAAAGCAAACTATTCCTCATTACTATTTAACAGTGGATGCATGTGTTGATAAACTCATGAGTTTACGGAGCAAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATATCAGTTAATGACCTTGTAATCAAGGCTGCTGCATTGGCTCTCCGCAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGACAGTATAATAATGTGAATATTAATGTAGCTGTGCAGACTGATAATGGTCTCTTTGTTCCAGTTATCAGGGATGCAGACAAAAAAGGCCTCTCTACAATAGGGGATGAGGTCAAACAATTGGCAAAGAAAGCCAAGGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGTACATTTACAGTGTCTAACCTGGGAGGGCCATTTGGTGTCAAACAATTCTGTGCAATCATCAATCCTCCTCAGTCGGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCATTCCGGGATCAGGTGCGGAAGAATTCAAGTTTGGTTCTTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCCAGAATCCATGTTGTTGTAA 1614 0.4498 MASHLLNHSAKVRNASKLLHHERALLARWFSGDVQSSLNRNRDVWKTQLPESSTRSGVFVPASGYTKRNISMASIKRGSIMGSGFSGEISQSPQVLSRRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMESMEEGYLAKIVRGDGEKEIQVGEVIAITVEDEGDIAKFKDYKPSASEPSAPPAKEASAPSPPKKEVAEEPAREPESKVSKPSAPTSSGDRIFASPLARKLAEEKNVPLSSIKGTGHEGLIVKADIEDFLASGQVSAPSKAKDPTDAALDYIDIPVSQIRKVTASRLLLSKQTIPHYYLTVDACVDKLMSLRSKLNSLQEASGGSRISVNDLVIKAAALALRKVPQCNSSWANDYIRQYNNVNINVAVQTDNGLFVPVIRDADKKGLSTIGDEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAERRVIPGSGAEEFKFGSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1399 537 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 56 537 - -
Pvu10g1399 537 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 307 537 IPR001078 GO:0016746
Pvu10g1399 537 ProSiteProfiles Biotinyl/lipoyl domain profile. 110 186 IPR000089 -
Pvu10g1399 537 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 112 537 IPR006257 GO:0004742|GO:0006090|GO:0045254
Pvu10g1399 537 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 135 164 IPR003016 -
Pvu10g1399 537 MobiDBLite consensus disorder prediction 197 247 - -
Pvu10g1399 537 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 56 537 - -
Pvu10g1399 537 Pfam Biotin-requiring enzyme 112 184 IPR000089 -
Pvu10g1399 537 SUPERFAMILY CoA-dependent acyltransferases 307 537 - -
Pvu10g1399 537 CDD lipoyl_domain 111 184 - -
Pvu10g1399 537 Coils Coil 337 357 - -
Pvu10g1399 537 Gene3D - 291 535 IPR023213 -
Pvu10g1399 537 SUPERFAMILY Single hybrid motif 109 204 IPR011053 -
Pvu10g1399 537 Pfam e3 binding domain 248 283 IPR004167 GO:0016746
Pvu10g1399 537 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 249 286 IPR004167 GO:0016746
Pvu10g1399 537 MobiDBLite consensus disorder prediction 218 233 - -
Pvu10g1399 537 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 241 287 IPR036625 GO:0016746
Pvu10g1399 537 Gene3D - 105 211 - -
Pvu10g1399 537 Gene3D - 237 290 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1399 Pvu-Chr10 40647466 40654521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1399 2 537 Acyl Lipid Metabolism Gene Families AT1G54220 67.582 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1399 K00627 - gmx:100778218 913.294