Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1359 ATGGCGGAAAGCGCATCACTGTCGTCCAAACCCTCACCAATGGACCCTCAAAACCCCGCGGCATCTTCCAACCCTACAATCCCTTCCCCTTCCCACAACATGCCTTCACCCTCGCTCCCTCCGCTCCCCCAAGACCACCAACATCAACAGCAGCAGCAGAATCTTCATCAACAATTGAGTCCCCCTCAACAACAACAGCCTCTCGTGTCGTCGCAAGCCATGAACACCATCAACGGCATCAACCCTATCTCCAATTTCCAACTCCAGCAGACGCTGCAGCGATCGCCTTCCATGTCGCGCCTCAATCAAATCCAGCCTCAGCAGCAGTCGCAGCAGCAGCAGCAGTTCGGCGTCATGCGCCAGCAGGCCGGATTATACGGCGGACAGATGACCTTCGCCACCGCGGGCGGCGGAGCGGGCCAGCAGCAGCAGTTGGGCGGTTCCAATTTGTCGCGGTCCGCGTTGATAGGGCAGAGCGGGCACTTCCCCATGTTGTCTAGTGCTGCCACGCAGTTTAACTTGCTCTCCTCGCCAAGGCAAAAAGGTGGGCTAGTTCAGCAGTCTCAATTCTCAGGTAATTCTGCTGGACAATCACTGCAAGGAATGCAAGCAATGGGCATGATTGGATCACAAAATCTCACCTCACAACTGCGAGCTAATGGAGCTGTGGCTTATGCACAGCAGCTGCGAATGAGTCAGGGTCAAATCAGGCAGCAAATGTCACAGCAGAGTTCACTTAACACTGGACAGGTTCAAGGTTTACCAAGGTCATCATCCCTTGCTTTTATGAATTCTCAGTTGTCTGGGTTGTCTCAGAATGGGCAACCAGCGATGGTTCATAACTCCTTAACACAGCAACAGTGGCTTAAGCAAATGCCGGCAATGTCTAGCCCTGCCTCACCATTGCGTCTTCAACAGAGGCAGCAGCTGGCTTCTTCTACTCAATTGCAACAAAACTCTATAAGCCTTAACCAACAACAATTGTCCCAGCTGATTCAGCAACAGAAATCGATAGGGCAGCCTCAGCTGCATCAGCAGCAACAACAGCAGCAGCCTCAGCAGCTGCAACAGCAACTGCAACAACAGCTCATACATCAGCAGCCACAACAGCAGTCTCAGCCACAGGCTTCTGTTCATCAACAGCAACAGTCTCCAAGGATGCCTGGACCTGCAGGCCAAAAGTCATTCAGTCTAACAGGATCACAGCCAGATGCTACTGCATCTGGTGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAGCAACAAACCAAGTTCTGGGGAAGAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACAAGGTACACTGGACCCCGAAGTTATAGATCTTCTTTTAGAGCTTGCTGATGACTTCATTGATTCTACAACTACACACGGTTGCATTTTGGCAAAACATAGAAAATCGCCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTAACAGTTCCGGGGTATTCGAGTGAAGAGAAGAAGTATCAAAGCAAACCTCAATTAAATGACCTCCACAAGAGGCGCTTAGATATGATTCGCACATTGATGGAATCTTCGGCCTCTGAGTCAAATATTAACAGTTCTAAAGAGTTGAGTAGACAGGGCATTTCTAATCCTACCCCTGTGGCTGTGGGAGCTCACCATCTAGTAAGACCCTTGAGTTCAGAGCAGTTGGTTTCTCATGCAGCTGGTTCTCAAATGCTACAGCAGATGACAAGGTTTTAA 1764 0.4983 MAESASLSSKPSPMDPQNPAASSNPTIPSPSHNMPSPSLPPLPQDHQHQQQQQNLHQQLSPPQQQQPLVSSQAMNTINGINPISNFQLQQTLQRSPSMSRLNQIQPQQQSQQQQQFGVMRQQAGLYGGQMTFATAGGGAGQQQQLGGSNLSRSALIGQSGHFPMLSSAATQFNLLSSPRQKGGLVQQSQFSGNSAGQSLQGMQAMGMIGSQNLTSQLRANGAVAYAQQLRMSQGQIRQQMSQQSSLNTGQVQGLPRSSSLAFMNSQLSGLSQNGQPAMVHNSLTQQQWLKQMPAMSSPASPLRLQQRQQLASSTQLQQNSISLNQQQLSQLIQQQKSIGQPQLHQQQQQQQPQQLQQQLQQQLIHQQPQQQSQPQASVHQQQQSPRMPGPAGQKSFSLTGSQPDATASGATTPGGSSSQGTEATNQVLGKRKIQDLVAQVDPQGTLDPEVIDLLLELADDFIDSTTTHGCILAKHRKSPTLESKDLLLHLEKNWDLTVPGYSSEEKKYQSKPQLNDLHKRRLDMIRTLMESSASESNINSSKELSRQGISNPTPVAVGAHHLVRPLSSEQLVSHAAGSQMLQQMTRF* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1359 587 MobiDBLite consensus disorder prediction 94 116 - -
Pvu10g1359 587 MobiDBLite consensus disorder prediction 359 427 - -
Pvu10g1359 587 MobiDBLite consensus disorder prediction 1 70 - -
Pvu10g1359 587 MobiDBLite consensus disorder prediction 531 553 - -
Pvu10g1359 587 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 352 586 IPR037794 GO:0000124|GO:0005669|GO:0046695
Pvu10g1359 587 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 10 361 IPR037794 GO:0000124|GO:0005669|GO:0046695
Pvu10g1359 587 Pfam Transcription initiation factor TFIID subunit A 429 496 IPR003228 GO:0005669|GO:0006352
Pvu10g1359 587 SUPERFAMILY Histone-fold 426 497 IPR009072 GO:0046982
Pvu10g1359 587 CDD TAF12 428 496 IPR003228 GO:0005669|GO:0006352
Pvu10g1359 587 MobiDBLite consensus disorder prediction 291 311 - -
Pvu10g1359 587 MobiDBLite consensus disorder prediction 531 552 - -
Pvu10g1359 587 MobiDBLite consensus disorder prediction 43 70 - -
Pvu10g1359 587 MobiDBLite consensus disorder prediction 1 29 - -
Pvu10g1359 587 Gene3D Histone, subunit A 423 497 IPR009072 GO:0046982
Pvu10g1359 587 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 10 361 - -
Pvu10g1359 587 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 352 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1359 Pvu-Chr10 40081770 40091592 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1359 K03126 - gmx:100783017 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1359 10 40081770 40091592 Pvu10g1359 10 40081770 40091592 ECH