Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1349 ATGATTTACATTCTTTTCCTCTTCTCTCTTCTAGCATTCACTTCCAATGCTGCTGTGAATGATTTCTGTGTGGCAGACCTAAAGGGTCCAGATAGCCCTTCAGGCTATCAGTGCAAACCAACTAAAGAAGTGACGGTGGATGACTTTGTGTTCTCTGGCTTAGTAGCTGGAAACACCACAAACACTTTCAATGCTGCATTAACTTCTGCATTTGTTACTGATTTTCCAGGTGTGAATGGTCTTGGTGTATCAGCAGCACGGTTAGACATAGCGAAAGGAGGATCAATCCCAATGCACACACACCCTGCTGCCACTGAACTTTTGATAATGGTGGAAGGTAAAATCACTGCTGGTTTTATGACACCATTTGCAGTTTACACTAAGACACTGAAACCAGGAGATATTATGGTTTTCCCACAAGGACAATTACATTTTCAAGTGAATTCTGGAAAAGGAAAAGCCACTGCTTTTCTGGCTTTCAGTAGCGCAAACCCTGGAGCACAACTACTTGACCTTCTACTATTTGGTAACAGCATACCTTCTGAATTGATTGCACAAACTACCTTCCTTGACGTTGACCAAGTCAAGAAGGTTAAGAGACGTTTTGGTGGCAGAGGCTAG 621 0.4267 MIYILFLFSLLAFTSNAAVNDFCVADLKGPDSPSGYQCKPTKEVTVDDFVFSGLVAGNTTNTFNAALTSAFVTDFPGVNGLGVSAARLDIAKGGSIPMHTHPAATELLIMVEGKITAGFMTPFAVYTKTLKPGDIMVFPQGQLHFQVNSGKGKATAFLAFSSANPGAQLLDLLLFGNSIPSELIAQTTFLDVDQVKKVKRRFGGRG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1349 206 CDD cupin_OxOx 15 202 - -
Pvu10g1349 206 PANTHER GERMIN-LIKE PROTEIN 4 201 - -
Pvu10g1349 206 Gene3D Jelly Rolls 15 205 IPR014710 -
Pvu10g1349 206 ProSitePatterns Germin family signature. 94 107 IPR019780 GO:0030145
Pvu10g1349 206 PRINTS Germin signature 99 119 IPR001929 GO:0030145
Pvu10g1349 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Pvu10g1349 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Pvu10g1349 206 SUPERFAMILY RmlC-like cupins 20 203 IPR011051 -
Pvu10g1349 206 Pfam Cupin 56 196 IPR006045 -
Pvu10g1349 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 201 - -
Pvu10g1349 206 SMART Cupin_1_3 52 196 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1349 Pvu-Chr10 39972126 39972974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1349 1 204 Miscellaneous Gene Families AT5G20630 57.282 6.52e-78 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1349 - - gmx:100818105 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1349 10 39972126 39972974 Pvu10g1349 10 39972126 39972974 ECH