Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1343 ATGGCGGTTTCTACGATAGCGTTGTACGCGAGTCCGCCGAGCAGCGTGTGTTCCACGCCGCACCCTTGCCAGATCAACGCTCACGCTTCGTACGACTTCGAATTGGGGTCGCGATCTTCGTCGCCGGCGGCTTCGACGGCGCCTCCGTCAACGTCGCAGAAGCAGGTGACGGGCGGCCTCTCGTGCCTGTTCTCGTCTCCGGCGGTGAAACACGCGCCGTTGACGTCGAACTTTACCGGCGAGGAGGACGATTTGAAGGAGTTGGGCAGCTCCTTCTCGTTTTCTCCGAGCAAGTTTGGTGGGTCTTCGTGGAAGAGGGATCAGAGTCCTGTTTCGGTTTTTCATGGGCCTGTTTCGTGTAGTGGTAGCAGCAGAAGTTCCATTAGTTCTACCTCTGTGAGAAGTGTCAGGGGTGGGACTAGTGGGTTGTTTCATGGGTTTGTGAGGAATGCGTTGGGGTCTTGTTTGGATTATGACTTAGATGCGGGTGATTCTTCTGCCGCGCTTGTGGATGAGTTGACCTTCAATTTAGAGGATAATTTCGTGGAGGGTGGGTTTCATTTTGAGCCCTATGCTAAAAAGTTGCTGCTGGGGGCGCAGTTGAGACACAAGATCTTCTGTGAGGAGTTTGTCATCAAGGCCTTTTGTGAAGCTGAGAAGGCACACAGAGGGCAGATGCGGGCTAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACTGCTGTGTTGCTGGCTCTGATTGGTGCCAATTCCACTGTTGTGGCTGCGGGGCTCTTGCATGATACCTTGGATGATGCTTTTCTGAGTTATGATTGTATATTTGGAACGTTTGGCGCTGGAGTTGCTGATTTAGTTGAAGGGGTATCTAAACTGAGCCACTTAAGCAAGCTGGCTCGAGAAAACAACACAGCTTGCAAGTCAGTTGAAGCAGACCGTTTGCATACTATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAACTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCAGTGACCAAGCGGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCACTGGCCAATCGCTTAGGAATCTCTAGCTGGAAAGAACAATTGGAAAATTTGTGTTTTAAGCATCTCAACCCAAGCCAGCACGAGGAGCTTTCATCAAAGCTTGTGGAGTCGTACGATGATGCAATGATTACTTGTGCGATAGAGAGATTAGAGCAAACCCTTAAAGACGAAGGCATATCTTATAGTGTCATTTCTGGGCGGCACAAGAGCTTGTATAGCGTTTACTGCAAAATGTTGAAGAAGAAACTTACCATAGATGATATCCATGACATTTATGGACTGCGCTTGATTGTTGACAAGGATGAAGACTGTTATAAAGCCTTAACAGCTGTTCATCGGCTATGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGCCCCAAGTTCAATGGATATCAATCTCTGCATACTGTGGTGATGGCCGAAGGCAATGTTCCCCTTGAAGTACAAATTCGAACAAAAGACATGCATTTGCAAGCAGAATTTGGATTTGCAGCTCACTGGAGATACAAGGAAGATGATTGCCAGCATTCTTCATTTGTGCTTCAGATGGTGGAGTGGGCTCGATGGGTTGTTACCTGGCAGTGCGAAGCAATGAGCAGAGATTGTTCCTCTGTTGGATATGCAGATTCAGTCAAGCCCCCATGCAAGTTCCCTTCCCATGCTGCTGATTGCCCATACTCCTATAGGCCTGATTGTGGTCAGAATGGACCCGTGTTCGTTATCATGATCGAGAATGACAAGATGTCTGTCCAAGAATTCAGTGCAAACTCAACCATATTGGATTTGTTGGAAAGAGCTGGGCGTGCAAGCTCTAGGTTGACAGCATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGACTGAATCACAAGCCTGTGAGTGATCCCAATAGCAAGTTGAAGATGGGAGATGTTATTGAACTTACACCTGCCATACCTGACAAGTATCTTACAGAATACAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACCGTATCAAGCATGGGAACTTCTGGAAGTACCATGGTTGGCTCAAGAAGTTGA 2142 0.4795 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSSSPAASTAPPSTSQKQVTGGLSCLFSSPAVKHAPLTSNFTGEEDDLKELGSSFSFSPSKFGGSSWKRDQSPVSVFHGPVSCSGSSRSSISSTSVRSVRGGTSGLFHGFVRNALGSCLDYDLDAGDSSAALVDELTFNLEDNFVEGGFHFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLSYDCIFGTFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVTKRQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITCAIERLEQTLKDEGISYSVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIVDKDEDCYKALTAVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMAEGNVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYADSVKPPCKFPSHAADCPYSYRPDCGQNGPVFVIMIENDKMSVQEFSANSTILDLLERAGRASSRLTAYRFPLKEELRPRLNHKPVSDPNSKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSSMGTSGSTMVGSRS* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1343 713 CDD HDc 231 359 IPR003607 -
Pvu10g1343 713 ProSiteProfiles S4 RNA-binding domain profile. 651 688 - -
Pvu10g1343 713 Pfam HD domain 218 368 - -
Pvu10g1343 713 Gene3D Hypothetical protein af1432 200 384 - -
Pvu10g1343 713 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 713 - -
Pvu10g1343 713 SMART hd_13 229 346 IPR003607 -
Pvu10g1343 713 SMART RelA_SpoT_2 427 537 IPR007685 GO:0015969
Pvu10g1343 713 CDD NT_Rel-Spo_like 406 525 IPR007685 GO:0015969
Pvu10g1343 713 Pfam Region found in RelA / SpoT proteins 427 536 IPR007685 GO:0015969
Pvu10g1343 713 SUPERFAMILY HD-domain/PDEase-like 194 384 - -
Pvu10g1343 713 ProSiteProfiles HD domain profile. 233 337 IPR006674 -
Pvu10g1343 713 PANTHER - 1 713 - -
Pvu10g1343 713 SUPERFAMILY Nucleotidyltransferase 374 563 IPR043519 -
Pvu10g1343 713 Gene3D Beta Polymerase, domain 2 388 517 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1343 Pvu-Chr10 39933971 39938190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1343 228 534 EF-hand Containing Proteins AT3G17470 31.003 7.69e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1343 K00951 - gmx:100787301 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1343 10 39933971 39938190 Pvu10g1343 10 39933971 39938190 ECH