Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1333 ATGGATAATGGGATTCAAAACAATAAGAACTTCATTCTGCAAATGAGACCCCATTTTTCCGGATTCAGCTGGATACTTGTGCTTCTTGTTTTCGTCTCTGCTTCCTGTTCTTCTTCCCATGGAAGTATGGAATTGGAGAGAACTTTGGTGATTATAAAACCAGACGGATTACTTGGTAACTACACTGATGATATCAAGAGAACAATTGTAGAATATAGTTTCAGCATTTTTAAGGAAAGGATTGTTCAACTTGATGAGGCCACTGTAGAAAAGTTTTATGCTGAGCACTCTTCAAAATGTTTCTTTTCCAGACTTAAAAAATACATGACAAGTGGACCAGTGTTGGTTATGGTCTTAGAGAAGGAAAATGCTATTGCTGATTGGCGCGCTTTAATGGGCCCTACTGATGCAAGCAAGGCTAAGATTACTCACCCTCACAGTATCAGAGCAAAATGTGGATTGGATATAGAAAGGAATTGTGTTCATGGTTCAGACTCTCCTAAATCTGCACAAAGAGAGATTCCATTTTTCTTTAAGGAGCTGTCCTCAGATGTGGTTGCAGAGCATGATGAATTGTAG 579 0.3886 MDNGIQNNKNFILQMRPHFSGFSWILVLLVFVSASCSSSHGSMELERTLVIIKPDGLLGNYTDDIKRTIVEYSFSIFKERIVQLDEATVEKFYAEHSSKCFFSRLKKYMTSGPVLVMVLEKENAIADWRALMGPTDASKAKITHPHSIRAKCGLDIERNCVHGSDSPKSAQREIPFFFKELSSDVVAEHDEL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1333 192 PRINTS Nucleoside diphosphate kinase signature 48 70 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Pvu10g1333 192 PRINTS Nucleoside diphosphate kinase signature 92 111 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Pvu10g1333 192 PRINTS Nucleoside diphosphate kinase signature 112 129 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Pvu10g1333 192 PRINTS Nucleoside diphosphate kinase signature 159 178 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Pvu10g1333 192 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 35 191 - -
Pvu10g1333 192 ProSitePatterns Nucleoside diphosphate kinases active site. 159 167 IPR023005 -
Pvu10g1333 192 Gene3D - 39 190 IPR036850 -
Pvu10g1333 192 SMART ndk_5 45 185 IPR034907 -
Pvu10g1333 192 SUPERFAMILY Nucleoside diphosphate kinase, NDK 43 181 IPR036850 -
Pvu10g1333 192 Pfam Nucleoside diphosphate kinase 46 180 IPR034907 -
Pvu10g1333 192 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 35 191 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1333 K20790 - gmx:100500470 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1333 10 39761130 39764626 Pvu10g1333 10 39761130 39764626 ECH