Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1331 ATGTCTTGGGCAGGCCCTGAGGATATTTACCTTTCCACTTCACTTGCCAGCTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAACTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGAGCTGTATTGTGACATCCCTTTGGGTCTCTATGTGATCCGTGGGGAAAATGTTGTTCTGATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCTGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCTGAAAGGGAGGCCTCAGATCTGAAAGGGACTATGAGGAAAAGAATGGAATTCCTTGACTTTGATTAG 387 0.4522 MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1331 128 CDD LSm1 12 82 IPR034104 GO:0000956
Pvu10g1331 128 Gene3D - 12 126 - -
Pvu10g1331 128 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 2 127 - -
Pvu10g1331 128 PANTHER LSM1 2 127 IPR044642 -
Pvu10g1331 128 Pfam LSM domain 14 80 IPR001163 -
Pvu10g1331 128 SMART Sm3 13 81 IPR001163 -
Pvu10g1331 128 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1331 Pvu-Chr10 39744691 39747379 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1331 K12620 - gmx:100306352 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1331 10 39744691 39747379 Pvu10g1331 10 39744691 39747379 ECH