Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1279 ATGGCGGAGAAATCATGCATCAAGCGCCTTCAGAAGGAATATAGAGCTCTTTGTAAAGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGACGGTTCATGACACAAAAAAAGATCTGTTTGTCTATGAGCGACTTTCATCCTGAAAGTTGGAATCCCATGTGGTCTGTATCAAGCATATTAACAGGACTTCTTTCGTTCATGATGGACAACAGTCCAACCACTGGCAGCGTAAACACAACCACAGCTGAGAAGCAACGTCTAGCAAAATCTTCCCTTTCTTTCAACTCTAAGAACGCAACATTCAGGAAGATGTTCCCTGAGTATGTGGAGAAGTACAACCAGCAACAACTTTCTGAACAGGCTGCTCAAGAGCGGGTCTCAACAGAGGCTTCTCCTGACAAGAGTTCAAAGTCAGTTTTGGAGAACAAATTAGAATCCTCAGGAGAAGACGTGAGAAGAGTAGATGGTTTGAAGGATATGAGGAAAAACAGAAAACCATTTCCAACATGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCGTTACCTCTGCTTCAGCTGTGA 717 0.4282 MAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNSKNATFRKMFPEYVEKYNQQQLSEQAAQERVSTEASPDKSSKSVLENKLESSGEDVRRVDGLKDMRKNRKPFPTWMMLLLFSIFGVVMALPLLQL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1279 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 34-LIKE 3 238 - -
Pvu10g1279 238 CDD UBCc 7 157 IPR000608 -
Pvu10g1279 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 238 - -
Pvu10g1279 238 SMART ubc_7 8 162 - -
Pvu10g1279 238 Pfam Ubiquitin-conjugating enzyme 9 132 IPR000608 -
Pvu10g1279 238 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
Pvu10g1279 238 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Pvu10g1279 238 MobiDBLite consensus disorder prediction 167 183 - -
Pvu10g1279 238 SUPERFAMILY UBC-like 5 148 IPR016135 -
Pvu10g1279 238 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1279 Pvu-Chr10 39278159 39282413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1279 1 238 Miscellaneous Gene Families AT1G17280 77.917 4.07e-136 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1279 K04554 - gmx:100778181 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1279 10 39278159 39282413 Pvu10g1279 10 39278159 39282413 ECH