Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1262 ATGGTGGTGGCTGCCGGCGCTAAGTTCAATTTGAGAAGAGATAATGGTTCTTCTCATAATGGTATCAGCGGTTACAGCAGTGATGGAGAACTTTCCAGAATTAGTAATAGTGGCTGTTTTTCATCAGTGACAGAGGTGGAGAGAGACCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACTTCAAATCATTCTGGTTGTCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTCCAGGAATTCTGGGTTGGAAATGAAGAGCTTGTTCACATGTATGAAGAGAGACTGGGAGATGCTGGCTACAATCTCTTCAAGCTTGGTCGAACCAACAACCGTGGAGATGGTCTACTGACTGCTATACATAAAGAATGTCTAAGAGTTGTTGATTATCGAGAGCTGCTTTTGAACGATTGTGGCGATCGTGTTGCTCAATTGCTACACGTTCAGTCAGTTGCCCCCTCACAAAACCAAAAAGGCAGTGTTCCCCACGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCACGATTCAAGTCTCTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTACAATATGTGGAATTGTACCAGAGAGAAAACAGGCTCAAACCCATGCCTATCATACTCTGTGGTGACTGGAATGGCAGCAAGCGTGGGCATGTTTACAAGTTCCTTAGGTCACAAGGGTTTGTATCATCGTATGATACTGCTAATCAATGCAGTGACAGTTATGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAAACCAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTGCGAAAAGGATCAATGTCTGAAAATGATGCATTTGCCATTCTGAAGGGTGACAACTATGCTGATGCTGTGACATATTTTAGTTTCTCCGAAGCACTTCGGAAGGCAAAGTTGATTGGTGTGCCTTATGGACTATGTTTTCAACAACTACAAGATCTATGGAATCAAGTAGATGTTGATGGAAATGGTGTTATCGACTTTGAAGAGTTCAAGAAGATTTGGAATTCAGCATGTCCAGATCATGTGTTGGAAAACTTGAATGGGTGCATGGAAGATGTTAACACAGAATTGGAGCAGCAAGAAGCCATTGGTTTTATGATAAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTCTCTGATCATGCTAGACTCACAGCTGTGTTTTCGCCAGCAAGGATGAAATGTTCTGGCACACAAAACTGA 1419 0.4228 MVVAAGAKFNLRRDNGSSHNGISGYSSDGELSRISNSGCFSSVTEVERDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFKSFWLSRNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYNLFKLGRTNNRGDGLLTAIHKECLRVVDYRELLLNDCGDRVAQLLHVQSVAPSQNQKGSVPHEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTANQCSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKGSMSENDAFAILKGDNYADAVTYFSFSEALRKAKLIGVPYGLCFQQLQDLWNQVDVDGNGVIDFEEFKKIWNSACPDHVLENLNGCMEDVNTELEQQEAIGFMIKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMKCSGTQN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1262 472 Gene3D - 332 425 - -
Pvu10g1262 472 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Pvu10g1262 472 SUPERFAMILY DNase I-like 46 269 IPR036691 -
Pvu10g1262 472 Pfam EF hand 372 398 IPR002048 GO:0005509
Pvu10g1262 472 Gene3D Endonuclease/exonuclease/phosphatase 39 329 IPR036691 -
Pvu10g1262 472 Coils Coil 405 425 - -
Pvu10g1262 472 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 23 468 - -
Pvu10g1262 472 SMART efh_1 371 399 IPR002048 GO:0005509
Pvu10g1262 472 SUPERFAMILY EF-hand 274 398 IPR011992 -
Pvu10g1262 472 SUPERFAMILY EF-hand 350 396 IPR011992 -
Pvu10g1262 472 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 23 468 - -
Pvu10g1262 472 Pfam Endonuclease/Exonuclease/phosphatase family 87 283 IPR005135 GO:0003824
Pvu10g1262 472 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1262 Pvu-Chr10 39139630 39143435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1262 118 468 EF-hand Containing Proteins AT1G02270 61.932 6.60e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1262 - - gmx:100788191 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1262 10 39139630 39143435 Pvu10g1262 10 39139630 39143435 ECH