Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1244 ATGGAGCTTGACATCCGTTCACTCCTCAACTCCGCCACCTCCGCTACCTCCGGTTCCTCCTCCGACACCGACGACGAAGCTCCCCACCGCACCATCGATGATATTCTCAACGACTGTGACACTTCATCTTCCTCAACCTCTCCACCTTCCTCTCCATCTCACTCCCTCTCTTCACTCCCCAATTCCCATCCTCAAAACCCCACTCTTCAACCAAAACCACTCCAACCCGCACTCGATTCAATTTCTCGGTTCAAACCAGCCGAATTCGCTGACCGCACACGCGTTTCGCGCCCGTTCTCTTCTCTATTACAAGGCGTGCGGTCCAATGCGAAGCCGGGCGCCGCGCTCGCGGCGGCTGCAGCGGCGTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATTTCCAGGAGGAAATCTGCGGCAGCAATCAGCACCGAGTTGAGTTCGATCGTTGCCGCCGGCGACGATTATTCCGATGTTACTTCCAAAGGCGAATTGGGCGAGCCTAGCGAGAAATACGATCCTGTGCCGCGGAAAATCGAGACTCAGTCTGGTGAAAGTGCTTCTGTTAACAGCGAACGTGTTGATAGTGATGCAGAAATTGCCAATGATTTGAAGGCTGGTAGTGCCGCTGACAATCTGGTGCATAGTGATACTGATAATGACAATGGTGATGGTGATGGTGATGGAAATGGCTATTGCAATGATTCTTCTATAGTGAGTGAGGAGAATAGGAATTTAGATGAGGTTGACGGTGATCATGGGAAGGATATTAATTCTGCACCGTTTGATGAAGACAATGATGATCGTGACTTGGATGGGAATGATGGTGCTGATGGGAGAATCACAGCTACGGATTCTGCTGTGGAAACAGAAGAAACGGTGAATAATGGTGGCAGTACTGTGGAAAATGTTAAGAATGAGATGAGTGGCGGCGGTAGTGACGAGGGTAGTTCATTGGGTGATGTTTCAGAGCTAGTGGAAGAGAGGCTTGAGGAATTGGAAAGCAGAAGGGCTGCTAAGAGAGCAGAGAAGAAACGAGAGTCTTCAATGAAACCACTTGAATTGGCTGAAGAACTGGAGAAGAAGCGAGCTTCAACTGGTTTGCATCTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGACTCGAGGGCGTTCGAAGAGGGTCCACGACGTTGGGATACTTTGATGTTGATGCTGATAATGCAGTCACCAGGGCAATTTCGTCCCAAACATTCAGGCGTGAGCAAGGCTCTGGTCGAGCCTTGGCAGTTCATGCTAATTATATTGCAGTAGGAATGTCAAAAGGGCTCATTGTTGTCTTTCCCAGTAAATATTCCATTCATCATGCTGACAACTCTGATGGAAAGATGTTGATGCTTGCTGTACAAGGTGATCGGTTGCGTGCTCCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTAACCCTGTGGGATGTACAGAAAGGGGTTGTGGCAAAAGTTATTAGTGGCGAGCATACAGCCCCCGTAGTACATACCTTATTTTTGGGACAAGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTGCACATTATCTCAGTTGTTCCTTTGTTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACAGGCTTGGTGCTTTCGGCTTCACCACTCCTTTTCGATGACTTCAGTGGAAGTGCTTCTCCTTTTTCTCAGGGAAACACCCCAGCCCCAGCCAGCAGTATAAGCAGCATGATGGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAATGAATCGTCTTCTTTGGTGGAAGAAGGTGTGGTTGTATTTGTAACCCATCAAACTGCATTGGTGGTACGTCTGACCCCTACATTGCATGTCTATGCTCAACTCTCTAGGCCAGACGGGGTTCGGGAGGGGTCTATGCCATATACTGCATGGAAATACATGACACAAACACATAGTTCTACTGAAAATATGTCTGCAGAAGCTATTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGTAAGGTTCTGGTTGCAAAGTTGGTCAAATCAGAACTAAAAGTATATGGAAGATGGTCTCTCGAAGGTGCGGCTATAGGTCTAGCGTGGTTGGATGATCAGATGCTGGAAGTTCAAACTTCAAGTGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTATTGCCGTAGATGGCATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCAATAATGTATTTGGAAATCCTGAGAAAGCTTATCATAACTCTCTTGCTGTAAGAGGAGCTTCTATTTATATACTTGGTCCAACACATCTTCTTATTTCTCGTCTTCTACCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGCCATGCTCATGGGGTTATTGACCTTCCTAGAACCTTGGATGCCGTACATGAGGCCATAATGCCCTTCTTGGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTCTGCAATCAAATTGGTAAAGTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAGTGCATTGTGAGATAAAGGAGCAATACACCCGTGTTGGTGGGGTTGCTGTTGAATTTTGTTGTCATATCAAACGGATGGACATTCTTTTTGATGAAATTTTCTCCAAGTTCGTGGCTGTTCAACAGCGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAGGATATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGTACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCATATGGATATATCATCCTTGGATTTTAATCAGGTTGTCAGATTATGCCGGGAGCATGGACTTTATAGTGCCCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGCTGTTTGCTGTATTACAAAATAGCCAAAAGGAAAGTGCTACAGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCGTTTCCACCAGGCCGTGGAACTATTCCTCCCACACGCTTACCTTCTCTTAGAAGAGAACTTGTGGAGTTTTTGTTAAAGGACTCCTGTACTTCGAAATCTCAGACAACTTCAGACTTTGTGTCCAGAAGACCCCAATCAAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACGTTAGATGTTCTCAGATGTGCTTTTATGGAAGATGAAATTTCAAATGCCTGCTCATCTTCACCGGATTCAACCAATAAATCTTTAGAGGAAGCAAAAAAAGAAGATAATGCCATTGAAACTCAAGATGCTTTGGTCCAGAACACAATTGATGCTCTCATTCAAATAATTGATATGAATATTGTTCAGAATGATACAACCTTTAGTAGTTGTGAAGATGGGTTGATAGAAGAGTGGCCTTCCAAGGACATAGGTTATCTATTTGAGTTCATTGCATATTATGTTGCTCTCCAAAGATCTAAAATTTCAAAGGGTGTGCTATGTCAGATATTGGAATATTTGACATCTAGTAGTCACTTGTCTACCAATATTTCTGTTCATGGTCCAACTCCAAAAAATAGAGAGAAGCAAGTACTAGCACTTTTGGAAGTACTTCCTAAGTCAGACTGGGATCCGTCATTTGTGCTAGATTTATGTGAAAGAGCCAAATATCATCAGGTTTGTGGATTGATCCATAGTTTCAAACATGAATATGTGGCTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTATTCATACCTTCTCCTTTATTAATAAAGCATTATCACAGTTGACTGACAATGACCTTGTAGCATTTCGATCAGCAGTCATACTGCGAATTCCTGCATTGGTTGAACTTAGCAGGGAGGGTGCCTTCCATGTGGTTATCAGTCATTTTAGCGAAGAAAGTTCCCATATCATAACTGAACTTCACTCTCATCCAAGAAGCCTTTTTCTTTATTTAAAGACACTCATTGAGCTTCACTTATTTGGCACCCTAGACTTGTCTAATTTGAGAAAGGATGACACTATGAATCCCCTTAACGGAAGGCAGGTTAAGGATCACCCTGAAGGAGTCAGAGATTACTTAGAGAATATATCCAATTTCCCCAAGTACATGCGGGAAAAACCAATTCATGTGCCTGATGATCGTATTGAGCTTTACCTTGAGTTATTATGCAAATACGAAGGTCATTCAGTTCTGAAGTTTCTGGAAATGTTTGATAGCTATAGAGTTGAACATTGTTTACGTCTCTGTCAAGAATATGGCATTATAGATGCAACTGCATTCTTATTAGAAAGGGTTGGCGATGTTGGTAAAGCTCTTTCACTTACACTTTCTGATCTAAATGATAAATTCGTTGAGCTTGATGCTGCTGTGGAAGCTGTAGTTTTAAACCATCGCAGAGTTGGTTCTTCCCGTGTGGAAGTATTCGACACTATTTTAAGAACAAAGGAGGGAAGTGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAACGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAAGCACATTGGTTTAAATTACTTGACTCGTTTTGTGACCCATTGGTCGATTCAAATGATGGAGCATATGAGAGTGAAAATTATTTTGGAGTGCTAGCTGGATCGGCAGATTCACAACAGAACAAGGACACCTATAAAAGCAGCTGGAAAATTTCAAAGTCCCGAAATGGCCATATATTGAGAAAATTGCTATCACAGTTCATTAAAGAGATTGTAGAGGGAATGATTGGTTTTGTTCACCTTCCGACAATCATGTCTAAACTTCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGTTAATAGAAGATGATTCGTTTTATACAATGAGTTTACTCAAGAAAGGGGCCTCCCATGGATATGCTCCCAGGAGTCTCGTGTGCTGTATTTGTAATTGCCTTCTTACAAAGAACTCTGGTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATCTCCAATGTGAAGTTTCGGAAATTGAGGCACCAAGCAAAGGATCTTCGTCGGGATGCCCTCTATGCATGCCTAACAACAAATTCCAGCAGTCCCGAAACAAATCAATCTTTGCAATGAATGGCTTGGTCAATAAATTCTCATCAAAGCGCCAGTATCCCCATGGAAGTACCATCCATCCTCGTGACAGTGATTTGACAGAGAATATGTATGGACAACAACATATATCACGGTTTGAGATCTTGAGCAACCTGCAGAAAAATCAGAGATTTATGCAAATAGAAAACTTGCCTCAGTTGAAGCTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAGTAAAGTTGCAAACTTTCTTACCGGCGAAAGTAGCAATAATTCTTCTGCTATTGAGAAACAAAGTCGAAACAAGCAAAACCGGGAGCTAAGAGTTAAGGGTTCATCAATTAGATTTCCTTTGAAATCAAGTATATTTGGCAAGGAGAAGACAAATAAGAGGTGA 5754 0.4286 MELDIRSLLNSATSATSGSSSDTDDEAPHRTIDDILNDCDTSSSSTSPPSSPSHSLSSLPNSHPQNPTLQPKPLQPALDSISRFKPAEFADRTRVSRPFSSLLQGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAAISTELSSIVAAGDDYSDVTSKGELGEPSEKYDPVPRKIETQSGESASVNSERVDSDAEIANDLKAGSAADNLVHSDTDNDNGDGDGDGNGYCNDSSIVSEENRNLDEVDGDHGKDINSAPFDEDNDDRDLDGNDGADGRITATDSAVETEETVNNGGSTVENVKNEMSGGGSDEGSSLGDVSELVEERLEELESRRAAKRAEKKRESSMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSGRALAVHANYIAVGMSKGLIVVFPSKYSIHHADNSDGKMLMLAVQGDRLRAPVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLLHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTPAPASSISSMMGVVGGDAGWKLFNESSSLVEEGVVVFVTHQTALVVRLTPTLHVYAQLSRPDGVREGSMPYTAWKYMTQTHSSTENMSAEAIERVSLLAIAWERKVLVAKLVKSELKVYGRWSLEGAAIGLAWLDDQMLEVQTSSGQLYLFSKDGTVIHQTSIAVDGIGGDDLVSYHTHFNNVFGNPEKAYHNSLAVRGASIYILGPTHLLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAHGVIDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKVDQSNDSNSRSNSVHCEIKEQYTRVGGVAVEFCCHIKRMDILFDEIFSKFVAVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRRELVEFLLKDSCTSKSQTTSDFVSRRPQSNLYLLLKLDTEATLDVLRCAFMEDEISNACSSSPDSTNKSLEEAKKEDNAIETQDALVQNTIDALIQIIDMNIVQNDTTFSSCEDGLIEEWPSKDIGYLFEFIAYYVALQRSKISKGVLCQILEYLTSSSHLSTNISVHGPTPKNREKQVLALLEVLPKSDWDPSFVLDLCERAKYHQVCGLIHSFKHEYVAALDSYMKDVDEPIHTFSFINKALSQLTDNDLVAFRSAVILRIPALVELSREGAFHVVISHFSEESSHIITELHSHPRSLFLYLKTLIELHLFGTLDLSNLRKDDTMNPLNGRQVKDHPEGVRDYLENISNFPKYMREKPIHVPDDRIELYLELLCKYEGHSVLKFLEMFDSYRVEHCLRLCQEYGIIDATAFLLERVGDVGKALSLTLSDLNDKFVELDAAVEAVVLNHRRVGSSRVEVFDTILRTKEGSDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLVDSNDGAYESENYFGVLAGSADSQQNKDTYKSSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCICNCLLTKNSGSSGIRIFNCGHAIHLQCEVSEIEAPSKGSSSGCPLCMPNNKFQQSRNKSIFAMNGLVNKFSSKRQYPHGSTIHPRDSDLTENMYGQQHISRFEILSNLQKNQRFMQIENLPQLKLAPPAVYHEKVSKVANFLTGESSNNSSAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR* 1918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1244 1917 PANTHER VACUOLAR PROTEIN SORTING VPS41 305 1844 IPR045111 GO:0006623
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 154 329 - -
Pvu10g1244 1917 PANTHER - 305 1844 - -
Pvu10g1244 1917 ProSitePatterns Trp-Asp (WD) repeats signature. 484 498 IPR019775 -
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 288 315 - -
Pvu10g1244 1917 CDD RING-H2 1726 1775 - -
Pvu10g1244 1917 Coils Coil 325 352 - -
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 1874 1898 - -
Pvu10g1244 1917 Pfam Golgi CORVET complex core vacuolar protein 8 945 1129 IPR025941 -
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 183 197 - -
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 162 180 - -
Pvu10g1244 1917 Gene3D - 387 546 IPR015943 GO:0005515
Pvu10g1244 1917 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 506 IPR001680 GO:0005515
Pvu10g1244 1917 SUPERFAMILY RING/U-box 1719 1777 - -
Pvu10g1244 1917 Pfam Region in Clathrin and VPS 1448 1513 IPR000547 GO:0006886|GO:0016192
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 1 85 - -
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 7 22 - -
Pvu10g1244 1917 ProSiteProfiles Zinc finger RING-type profile. 1726 1774 IPR001841 -
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 243 266 - -
Pvu10g1244 1917 MobiDBLite consensus disorder prediction 37 65 - -
Pvu10g1244 1917 SUPERFAMILY WD40 repeat-like 412 542 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1244 Pvu-Chr10 38829040 38841260 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1244 K20178 - gmx:100780869 3106.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1244 10 38829040 38841260 Pvu10g1244 10 38829040 38841260 ECH