LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g1212	ATGAGGCAAGTAAAGCAAATCCATGGTTACACTCTAAGAAATGGCATAGACAACACCAAAATCCTCATTGAGAAGTTACTTGAAATCCCAAACCTTCACTATGCACACATGGTGTTGCATCATTCCCCAAAGCAAAACCTTTTTCTCTACAATAAGCTCATTCAAGCCTACTCCTCCCATCCCCAACACCAGCACCGATGCTTCTCCCTTTACTACCAAATGCGCCTTCATGGCTTCTTACCAAACCAACACACTTTCAACTTCCTCTTCTCTGCATGCACTTCCCTCTTTTCCCATTCCCTTGGCCAAATGCTCCATACCCATTTCATCAAATCAGGCTTTGAACCTGACCTCTTTGCAGCCACTGCTTTGCTTGATATGTATTGCAAAGTGGGCACGTTGGGACTTGCACGCCAATTGTTTGATGAAATGCCAGTGAGAGGGGTACCCACATGGAATGCTATGATGTCTGGGTATGCAAAATTTGGTGATATGGAGGGGGCGTTAGAGTTGTTTGGATTGATGCCTACTAGGAATTTGGTGTCATGGACCACCATGATATCTGGTTACTCGCGAAATAAACAGTTTGGTGAGGCTTTGGGGTTGTTCCTGAAGATGGAGCAGGAAAAAGGCATAGTGCCCAATGAAGTAACCTTGGCAAGCATTTTGCCAGCTTGTTCAAATCTTGGAGCACTGGAGATTGGGCAGAGGGTTGAAGCATACGCAAGGAAGAATGGGTTCTTTAAGAATTTATATGTAAGCAATGCTTTATTGGAGATGTATGCAAAATGTGGTAAGATTGATGTTGCATGGCGGGTGTTCAATGAGATTGGCAGGTTCAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGACAATGTTGCAAGGCCTTTGAGCTTTATGATCAAATGCTGGGGGAAGGAACTTCACCTGATGATGTGACATTCGTGGGGCTCCTCTTGGCATGCACTCATGGAGGCATGGTTGAAAAGGGCAGACATATTTTCAAGTCAATGACCACAGCCTTCCACATTATTCCCAAACTAGAGCACTATGGATGCATGGTTGATCTCCTAGGCCGTGCCGGGCATTTGAGAGAAGCTTATGAGGTAATACAAAGTATGCCCATGAAACCAGACTCGGTGATATGGGGGGCTTTGTTGGGAGCTTGCAGCTTCCATGGTAATGTTGAACTGGCTGAGGTTGCAGCAGAGTCTCTATTTGTACTTGAGCCTTGGAATCCTGGGAACTATGTTATTCTTTCCAACATTTATGCATCAGTTGGCCAATGGGATGGAGTTGCAAAGCTCAGGAAAGTGATGAAGGGCAACCAAATTACAAAGTCAGCAGGACATAGTTTCATTGAAGAGGGAGGTCAACTGCATAAGTTCATTGTGGAAGATAGATCACATCCTAGAAGGAACGAAATTCTTGCCTTGCTTGATGGAGTTTATGAAATGATAAAGCTTAATAGAAGTGCATTTGAATATCATTTGGATCTTGATTTGAGCAACTAA	1533	0.4397	MRQVKQIHGYTLRNGIDNTKILIEKLLEIPNLHYAHMVLHHSPKQNLFLYNKLIQAYSSHPQHQHRCFSLYYQMRLHGFLPNQHTFNFLFSACTSLFSHSLGQMLHTHFIKSGFEPDLFAATALLDMYCKVGTLGLARQLFDEMPVRGVPTWNAMMSGYAKFGDMEGALELFGLMPTRNLVSWTTMISGYSRNKQFGEALGLFLKMEQEKGIVPNEVTLASILPACSNLGALEIGQRVEAYARKNGFFKNLYVSNALLEMYAKCGKIDVAWRVFNEIGRFRNLCSWNSMIMGLAVHGQCCKAFELYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTAFHIIPKLEHYGCMVDLLGRAGHLREAYEVIQSMPMKPDSVIWGALLGACSFHGNVELAEVAAESLFVLEPWNPGNYVILSNIYASVGQWDGVAKLRKVMKGNQITKSAGHSFIEEGGQLHKFIVEDRSHPRRNEILALLDGVYEMIKLNRSAFEYHLDLDLSN*	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g1212	510	PANTHER	OS06G0125600 PROTEIN	2	461	-	-
	Pvu10g1212	510	Pfam	PPR repeat family	282	328	IPR002885	-
	Pvu10g1212	510	Pfam	PPR repeat family	179	226	IPR002885	-
	Pvu10g1212	510	Gene3D	Tetratricopeptide repeat domain	150	245	IPR011990	GO:0005515
	Pvu10g1212	510	Gene3D	Tetratricopeptide repeat domain	296	481	IPR011990	GO:0005515
	Pvu10g1212	510	Gene3D	Tetratricopeptide repeat domain	22	149	IPR011990	GO:0005515
	Pvu10g1212	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	282	316	IPR002885	-
	Pvu10g1212	510	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	2	461	-	-
	Pvu10g1212	510	Coils	Coil	510	510	-	-
	Pvu10g1212	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	179	214	IPR002885	-
	Pvu10g1212	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	46	81	IPR002885	-
	Pvu10g1212	510	Pfam	PPR repeat	356	381	IPR002885	-
	Pvu10g1212	510	Pfam	PPR repeat	255	278	IPR002885	-
	Pvu10g1212	510	Pfam	PPR repeat	122	149	IPR002885	-
	Pvu10g1212	510	Pfam	E motif	399	461	IPR046848	-
	Pvu10g1212	510	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	117	151	IPR002885	-
	Pvu10g1212	510	TIGRFAM	PPR: pentatricopeptide repeat domain	285	317	IPR002885	-
	Pvu10g1212	510	TIGRFAM	PPR: pentatricopeptide repeat domain	181	216	IPR002885	-
	Pvu10g1212	510	TIGRFAM	PPR: pentatricopeptide repeat domain	151	180	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g1212	Pvu-Chr10	38290102	38292218	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g1212	5	494	Glycoside Hydrolase	AT3G49170	34.004	1.56e-88	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g1212	-		-	vra:106780347	996.497