Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1200 ATGCCGCCGCAAATGCAGCCCTTCGCCGATTTCCTCCGCAACGCGCCACAGGCAGACGGCAGCGAGAGGCGGACCCCACCGCTGAACCGAACCGTGAAGAAGACGCTGGTGGTAGAAGATTCCTCCTTGGACAATCCGGATCTGGGCCCGTTCCTTCTGAAGATGGCCCGAGAAACCATAGCGTCCGGTGAGAGCCCGGTGAAGGCCCTGGACTTCGCCATTCGGGCCTCCAGGTCCTTCGAGCGGTGTGCGGGCCCGGGCCTGGAGCTTGCCACGTGTCTCCACGTTGTTGCTGCGATATACAGCAGTTTGGGGCGGTTGGATGAGGCGGTCGAGGCTTTGGAGCGGTCCATTTTGTTGTTGGAAGGGGAAAACGGGTCGGGTCATGTCATGGCCCAGTTTTCCGGGTACATGCAACTTGGTGACACGTATTCGATGATTGGACAGTTGGATAGGGCAATTTCGTGTTACGAGTCGGGTTTGAAGATCCAAATGGATGTTCTGGGTGAGTCCGACCCGAGAATCGCTGAGACTTGTAGGTACTTAGCTGAAGCCCATGTCCAAGCCATGCAATTTGAGCAGGCAGAGAACTTCTGCAAGAAAACCCTCGAAATTCACAGGGAGCATTGTTCTCCTGCTTCCCTTACTGAAGCAACAGACAGGCGTCTAATGGCCCTTATATGTGAGGCCAAGGGAGATTATGAACCAGCTCTGGAGCACCTTGTCCTAGCTAGCATGTCAATGATCGCCAATGCACAAGATAATGAGGTTGCAGCAATTGATGTTAGCATTGGAGATATCTACATGTCACTCTGTCGTTTTGACGAGGCTGTTTTCGCCTATCAGAAAGCACTGACAGTGTTCAAATCCACCAAAGGTGAAAGCCACAGTTCTGTGGCTTTAGTGTTCATTCGCCTTGCTGACCTTTACTACAGGACAGGAAAATTAAGAGAGTCAAAATCGTATTGTGAAAATGCCTTGAGAATATACAGTAAGCCTGTGGTTGGAACAACTGCCGGGGAGATTGCAAGTGGGTTGACTGAAATCTCAGCCATCTATGAAGCTCTGAATGAGCCTGAGGAGGCATTGAAGCTGCTGCAGAAGGCAGTGAAATTGTTGCAGGACATCCCTGGACAATATAGGACAGTGGCAGGAATAGAAGCTCAAATGGGAGTGATGTTCTACGTGGTTGGGAGGTACATGGAGGCATGGAAGTCATTTGAGAATGCTATCACCAAGCTGAGAGCAAGTGGGGAGAAGAAATCTACCTTTTTTGGAGTTGTATTGAACCAGATGGGGCTGGCATGTGTGCAACTGTATAAAATAGGGGATGCTGCCAAACATTTTGAAGAAGCAAAAGTGATACTGGAGAGAGAGTGTGGTACATATCACTCTGACACTCTTGGAGTATATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAAGATGCCATTGAGATATTGGAATACATACTAAAGATGAGAGAAGAAAAGCTTGGAACTGCTAATCCAGATGTTGATGATGAAAAGAAGCGACTATTTGAGCTTTTGAAAGAAGCAGGAAGAGTTCGGAATAGAAAGGGGAAAAAATCTCTTGAAAACCTTATAGATTCCAGTTCATTAAAGATGAAGAAGGAAGGGAAAAAGAGATGGTCTGCTTTTGGCTTGAGAACTTAA 1686 0.4828 MPPQMQPFADFLRNAPQADGSERRTPPLNRTVKKTLVVEDSSLDNPDLGPFLLKMARETIASGESPVKALDFAIRASRSFERCAGPGLELATCLHVVAAIYSSLGRLDEAVEALERSILLLEGENGSGHVMAQFSGYMQLGDTYSMIGQLDRAISCYESGLKIQMDVLGESDPRIAETCRYLAEAHVQAMQFEQAENFCKKTLEIHREHCSPASLTEATDRRLMALICEAKGDYEPALEHLVLASMSMIANAQDNEVAAIDVSIGDIYMSLCRFDEAVFAYQKALTVFKSTKGESHSSVALVFIRLADLYYRTGKLRESKSYCENALRIYSKPVVGTTAGEIASGLTEISAIYEALNEPEEALKLLQKAVKLLQDIPGQYRTVAGIEAQMGVMFYVVGRYMEAWKSFENAITKLRASGEKKSTFFGVVLNQMGLACVQLYKIGDAAKHFEEAKVILERECGTYHSDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRNRKGKKSLENLIDSSSLKMKKEGKKRWSAFGLRT* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1200 561 MobiDBLite consensus disorder prediction 1 30 - -
Pvu10g1200 561 Gene3D Tetratricopeptide repeat domain 426 538 IPR011990 GO:0005515
Pvu10g1200 561 SMART tpr_5 343 376 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 384 417 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 468 501 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 300 333 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 91 124 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 258 291 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 176 209 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 134 167 IPR019734 GO:0005515
Pvu10g1200 561 SMART tpr_5 426 459 IPR019734 GO:0005515
Pvu10g1200 561 ProSiteProfiles TPR repeat profile. 343 376 IPR019734 GO:0005515
Pvu10g1200 561 ProSiteProfiles TPR repeat profile. 134 167 IPR019734 GO:0005515
Pvu10g1200 561 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Pvu10g1200 561 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 25 561 - -
Pvu10g1200 561 ProSiteProfiles TPR repeat profile. 258 291 IPR019734 GO:0005515
Pvu10g1200 561 SUPERFAMILY TPR-like 388 519 IPR011990 GO:0005515
Pvu10g1200 561 Coils Coil 104 124 - -
Pvu10g1200 561 Gene3D Tetratricopeptide repeat domain 245 425 IPR011990 GO:0005515
Pvu10g1200 561 SUPERFAMILY TPR-like 137 498 IPR011990 GO:0005515
Pvu10g1200 561 Gene3D Tetratricopeptide repeat domain 87 244 IPR011990 GO:0005515
Pvu10g1200 561 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 25 561 - -
Pvu10g1200 561 Pfam MalT-like TPR region 95 244 IPR041617 -
Pvu10g1200 561 SUPERFAMILY TPR-like 223 331 IPR011990 GO:0005515
Pvu10g1200 561 Pfam Tetratricopeptide repeat 257 331 - -
Pvu10g1200 561 Pfam Tetratricopeptide repeat 428 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1200 Pvu-Chr10 38133472 38137486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1200 97 303 Glycosyltransferase AT3G04240 24.312 3.30e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1200 - - gmx:100794697 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1200 10 38133472 38137486 Pvu10g1200 10 38133472 38137486 ECH