Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1173 ATGACACTTTGCATCGCCTTTCATAGCCATAGTTTTATGGATAACCTAGTACAACCTTTTCACCTTCTCAATCCATATGTTGTTCAGAACCCACAAACCCACATGCAACCCAGAAGCCTTTCACCCACTTCAGTTTCTCTAGGAATGTCAGAATCCCAGCTGGTTTCTTCTCAATTTTCCTCACAAAACTTCTCTCCATTTTTTCACCCTTTGGATAACTTGGGAGAGTTGAAGACTTTGAGTTCTGTGAGGGAATTGCATGCCCAGATGGTCAAAATGCCAAAAAGAGGGAACTCAGTGACAATGGATGGAAGCATGATGAGGAACTACTTGGAATTTGGAGACTTTGCGTCTGCAACAAAAGTTTTCTTTGTGGGTTTTTCAAGGAATTACCTTTTATGGAATGCTTTTCTGGAGGAGTTTGCTAGTTTTGGAGGTGACTCGCATGAGATTCTGGAGGTGTTCAAGGAATTGCATGATAAAGGAGTAGAATTTGACAGCAAAGCTCTCACTGTTGTTCTGAAAATTTGTTTGGCTTTGATGGACTTGTGGCTTGGGATGGAAGTTCATGCTTGTTTGGTTAAGAGAGGCTTCCATGTTGATGTACACTTGAGTTGTGCATTGATCAATCTCTATGAGAAGTGCTTGGGAATAGATATGGCAAATCGAGTGTTTGATGAGACCCCACTTCAAGAAGATTTCTTGTGGAATACAAGTGTTATGGCAAACTTGAGGAGTGAGAAGTGGGAGAAGGCCTTAGAGTTGTTCCGTCGAATGCAATCTGCTTCTGCCAAAGCCACTGATGGCACCATGGTCAAACTGCTGCAAGCATGTGGAAAGTTGAGAGCTCTCAACGAAGGGAAGCAGCTTCATGGGTATGTTATAAAATTTGGAAGAGTGTCAAATACTTCAATTTGCAATTCTGTAGTTAGCATGTACTCTAGGAACAATAGACTTGACCTAGCTAGAACAGTTTTTGATTCGATGGAGGATCATAACCAGGCATCTTGGAACTCAATAATTTCGAGTTATGCAGCCAATGGCCGTTTGAATGGTGCGTGGGATATCTTCCAAAAAATGCAGTCTTCCAGCATCAAACCAGATATTATAACTTGGAATTCTATTTTGTCTGGCCATCTTCTTCAGGGATCATATGAAATGGTTCTCACCAATTTCCGGAGCCTGCAAAATGGCAATTTCAAGCCAGATTCATGTTCAATAACTAGTGCTCTGCAAGCAGTTATTGAATTGGGTTGCTTTAATCTAGGGAAAGAAATCCATGGCTACATAATGAGAAGTAACCTTGACTATGATGCCTATGTTTGTACTTCTTTAGTGGATATGTATATTAAGAATATTTCCTTAGATAAAGCTGAAGCTGTGTTTCATTATTCCAAGAACAAAAATATTTGTGCTTGGAATTCATTGATATCAGGTTACACCTACAAGGGCATGTTTAACAATGCGGAAAATCTATTGAACCAGATGGAGGGGGAAGGGATAAAACCTGATTTGGTGACATGGAATAGTTTGATTTCAGGTTATTCAATGTGGGGCCACAGAGAGGAAGCTTTGGCCTTGATGAAAAGGATCAAGAGTTTGGGATTAACTCCTAATGTGGTGTCCTGGACTGCTATGATATCAGGTTGCTGTCAAAATAACAACTTCATGGATGCCCTGCAGTTTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACTCTACCACCATTTGCAGCTTACTCCGTGCATGTGCGGGTCCGTCACTGCTAAAGAAAGGTGAGGAGTTACACTGCTTTTGTATGAGACATGGATTTGTGGATGACATATATGTGGCCACAGCCCTTATTGACATGTATAGTAAGGGAGGAAAACTAAGAGTAGCCCATGAGGTTTTCAGGAAAATACAGGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGATATGCTACTTATGGCCGTGGTGAAGAGGTATTCACTCTTTTTGACAGCATGTGCAAAACAGGTATCATACCTGATGCTATAACCTTCACCATTCTTCTATCTGGCTGCAAGAATTCAGGTTTAGTTATGGAAGGGTGGAAGCACTTTGACAGCATGAAGAGGTACAATATTACTCCAACTATTGAGCATTACTCTTGCATGGTAGATCTTCTTGGAAAAGCTGGCTTTCTTGATGAAGCTTTGGATTTCATCCACGCCATGCCACATAAGGCAGATGCTAGTATTTGGGGTGCTCTTCTTTCAGCATGCAGAATTCACAAAGATGTTAAGATAGCAGAGGTTGCAGCAAGGAATCTTTTCAGGTTGGAACCATATAACTCTGCTAACTATGTATTGATGATGAACATATATTCCAGTTTTGATAGATGGGGGGACGTAGAGCGTCTTAAAGACTCAATGACTGCCATGGGAGTGAAAATTCCAAATGTTTGGAGTTGGACACAAGTTAGGCAAACTATTCATGTGTTCTCCACAGAAGGGGAATCACATCCACAAGAAGGAGAAATATATTTTGAGTTATATCAATTAGTCTCTGAGATAAGAAAGCTGGGATATGTACCTGATACACATTGTGTACTTCAGAACATTGATGAGAAGGAGAAGGAAAAGGTTCTGCTCAGTCACACAGAGAAGTTGGCAATGACATATGGACTGATGAGCATTAAGGATGGATCTCCCATCAGGGTAGTGAAGAACACAAGAATTTGTCAAGACTGTCACACAGCAGCAAAGTACATTTCTCTGGCTCGAAACCGTGAGATTTTCCTCAGAGACGGTGGCCGTTTCCACCATTTCATGAATGGAGAATGCTCATGCAATGATCGTTGGTAA 2841 0.4097 MTLCIAFHSHSFMDNLVQPFHLLNPYVVQNPQTHMQPRSLSPTSVSLGMSESQLVSSQFSSQNFSPFFHPLDNLGELKTLSSVRELHAQMVKMPKRGNSVTMDGSMMRNYLEFGDFASATKVFFVGFSRNYLLWNAFLEEFASFGGDSHEILEVFKELHDKGVEFDSKALTVVLKICLALMDLWLGMEVHACLVKRGFHVDVHLSCALINLYEKCLGIDMANRVFDETPLQEDFLWNTSVMANLRSEKWEKALELFRRMQSASAKATDGTMVKLLQACGKLRALNEGKQLHGYVIKFGRVSNTSICNSVVSMYSRNNRLDLARTVFDSMEDHNQASWNSIISSYAANGRLNGAWDIFQKMQSSSIKPDIITWNSILSGHLLQGSYEMVLTNFRSLQNGNFKPDSCSITSALQAVIELGCFNLGKEIHGYIMRSNLDYDAYVCTSLVDMYIKNISLDKAEAVFHYSKNKNICAWNSLISGYTYKGMFNNAENLLNQMEGEGIKPDLVTWNSLISGYSMWGHREEALALMKRIKSLGLTPNVVSWTAMISGCCQNNNFMDALQFFSQMQEENVKPNSTTICSLLRACAGPSLLKKGEELHCFCMRHGFVDDIYVATALIDMYSKGGKLRVAHEVFRKIQEKTLPCWNCMMMGYATYGRGEEVFTLFDSMCKTGIIPDAITFTILLSGCKNSGLVMEGWKHFDSMKRYNITPTIEHYSCMVDLLGKAGFLDEALDFIHAMPHKADASIWGALLSACRIHKDVKIAEVAARNLFRLEPYNSANYVLMMNIYSSFDRWGDVERLKDSMTAMGVKIPNVWSWTQVRQTIHVFSTEGESHPQEGEIYFELYQLVSEIRKLGYVPDTHCVLQNIDEKEKEKVLLSHTEKLAMTYGLMSIKDGSPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCNDRW* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 332 IPR002885 -
Pvu10g1173 946 PANTHER OS05G0586900 PROTEIN 146 227 - -
Pvu10g1173 946 PANTHER OS05G0586900 PROTEIN 230 934 - -
Pvu10g1173 946 TIGRFAM PPR: pentatricopeptide repeat domain 541 574 IPR002885 -
Pvu10g1173 946 TIGRFAM PPR: pentatricopeptide repeat domain 643 676 IPR002885 -
Pvu10g1173 946 TIGRFAM PPR: pentatricopeptide repeat domain 677 710 IPR002885 -
Pvu10g1173 946 TIGRFAM PPR: pentatricopeptide repeat domain 506 540 IPR002885 -
Pvu10g1173 946 TIGRFAM PPR: pentatricopeptide repeat domain 305 332 IPR002885 -
Pvu10g1173 946 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Pvu10g1173 946 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Pvu10g1173 946 Pfam DYW family of nucleic acid deaminases 854 946 IPR032867 GO:0008270
Pvu10g1173 946 Gene3D Tetratricopeptide repeat domain 283 422 IPR011990 GO:0005515
Pvu10g1173 946 Gene3D Tetratricopeptide repeat domain 690 767 IPR011990 GO:0005515
Pvu10g1173 946 Gene3D Tetratricopeptide repeat domain 594 689 IPR011990 GO:0005515
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Pvu10g1173 946 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 230 934 - -
Pvu10g1173 946 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 146 227 - -
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat family 468 515 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat family 538 586 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat family 643 686 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat family 333 378 IPR002885 -
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat 236 261 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat 713 738 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat 614 639 IPR002885 -
Pvu10g1173 946 Pfam PPR repeat 305 332 IPR002885 -
Pvu10g1173 946 Gene3D Tetratricopeptide repeat domain 143 282 IPR011990 GO:0005515
Pvu10g1173 946 Gene3D Tetratricopeptide repeat domain 469 593 IPR011990 GO:0005515
Pvu10g1173 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Pvu10g1173 946 Pfam E motif 756 812 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1173 Pvu-Chr10 37648103 37651516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1173 166 946 Glycoside Hydrolase AT3G49170 31.889 6.97e-127 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1173 - - gmx:100796795 1664.05