Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1160 ATGTGGAAAATGCTGCACCCAACCACTTCTACACTCACCACCACAACCCTCCTCAACCAACCCTCTCACCCCACATCAACCTCCGCCAACGCCCTCGATGTCGCCGTCGTCGCCGCCGCCTGCGCTCTCCTCCTCCTCCTCGCCCTCTCTGCCCTTCTCTACTGTCTCCGCAGGCGCAAGACCTTCTTCGCTGACTCCACCGTCAACTGCTTTCCCTGCGATGCCGCCGCCGCCTATCGGAAAACGAGGAACGCCACGTACTCGCCGGAGCTCCATCCCCTGCTCGCTCGGCAAACCTTGCCGGCCACGGTCGACGACGAAGAACAACAACTCTGGAAGATTACAGAATCCGAAGTTGTATGTGAACCAGAGGAATCAAATTCTGAAGATGATGTTGGAGTATCTGAGAATGACTTTGAAACACAGATTTTACTACATTTTCTACTTTCACTCAGAGAAGAAAAGAAGAAACAGGCAACCAAGTTGGAAGAAGTGCTGAATTTCTTGAATGAAGATATTAAGGAGGTAGAAAGAAGCTACTCACTTGGGACAGATTCAGCATTTCCTTTGGCACAAACGAAAAATCCTGAAGAGAGAGGAAACGGTGCACACTGTCAAGATTTTTCCAGTTCAGACATTAGTAGATTGATTCGAAGGTCATTTGCTGATGAAGAAAGATTATTGAGTAATATAAATCAGCTAGAGAGTTCATACTTTTCTGCAAGATCCAGAGCCCTGCCGAAAGAGGCTTCATCTGCTTCAAGCAATGATAAAAATGTGATGGAAAGTGAATGGAGGCATGTAGAGACTGTTGATAAGGAGCCAAGAAGAATTCGGAGTTCTTCTGTTGCTTGTCTAGAATCATTCTGTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGCCAGATTAAGAAACAGTGATCAGTTTAGTTCTGGCAATATAGTATGTGCTTTAAGCTTTGACCGTGATGAAGAATACATTGCAGCAGCAGGAATTTCAAGGAAAATCAAGATTTTTGACCTCAGTGATATTTCAAATGATTCTGTTGAAATCCAGTACCCAGTAGTTGAGATGTCAAATGAATCAAAGATGTGGGATGCAGGCACTGGTCAGCTTTTATCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACATTTCTCTGTCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGTTCTGTCAAAGTTTGGAATATTAACGAGAGAAATTCTGTGGAAACTATAAAGATGCCTTCCAATATATGCTGTGTTCAGTTCTCTCCTCCATCGACAAATCTTTTATTTTTTGGATCAGCTGATCACAAGGTTTATGGTTATGATCTTCGTCACACTAGAATCCCATGGTGCTCTTTAGCTGGTCATGCCAAATCTGTGAGCTATATCAAATTTATAGATGCTGAAACAGTTGTCACTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTAAAGAAAACCAGTTCTTCTGCTTTGTCTTCTGATGCTTGTGTCTTAACTTTTAAAGGACATAGAAATCAAAAGAATTTCGTGGGATTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCACTGCCAGTGCCAATTGCTACTCATAAATTTGAGTCAATTGATCCCATTTCTGGTCATCCAGATAATGGACAGTTTGTTTCTTGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTAGCCGCCAACTCAGTTGGAATTGTGAAACTATTGCAGATGGTCTGA 1812 0.4277 MWKMLHPTTSTLTTTTLLNQPSHPTSTSANALDVAVVAAACALLLLLALSALLYCLRRRKTFFADSTVNCFPCDAAAAYRKTRNATYSPELHPLLARQTLPATVDDEEQQLWKITESEVVCEPEESNSEDDVGVSENDFETQILLHFLLSLREEKKKQATKLEEVLNFLNEDIKEVERSYSLGTDSAFPLAQTKNPEERGNGAHCQDFSSSDISRLIRRSFADEERLLSNINQLESSYFSARSRALPKEASSASSNDKNVMESEWRHVETVDKEPRRIRSSSVACLESFCEGLCKFARYSKFEECARLRNSDQFSSGNIVCALSFDRDEEYIAAAGISRKIKIFDLSDISNDSVEIQYPVVEMSNESKMWDAGTGQLLSQYMEHQKRAWSVHISLSDPKMFASGSDDCSVKVWNINERNSVETIKMPSNICCVQFSPPSTNLLFFGSADHKVYGYDLRHTRIPWCSLAGHAKSVSYIKFIDAETVVTASTDNSLKLWDLKKTSSSALSSDACVLTFKGHRNQKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIATHKFESIDPISGHPDNGQFVSCVCWRKKSNMLVAANSVGIVKLLQMV* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1160 603 Gene3D - 289 603 IPR015943 GO:0005515
Pvu10g1160 603 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 467 500 - -
Pvu10g1160 603 Pfam WD domain, G-beta repeat 384 414 IPR001680 GO:0005515
Pvu10g1160 603 Pfam WD domain, G-beta repeat 466 498 IPR001680 GO:0005515
Pvu10g1160 603 PANTHER LIGASE COP1, PUTATIVE-RELATED 114 603 - -
Pvu10g1160 603 ProSiteProfiles Trp-Asp (WD) repeats profile. 467 507 IPR001680 GO:0005515
Pvu10g1160 603 PANTHER PROTEIN SPA1-RELATED 2 114 603 IPR044630 GO:0009640
Pvu10g1160 603 SMART WD40_4 301 345 IPR001680 GO:0005515
Pvu10g1160 603 SMART WD40_4 417 456 IPR001680 GO:0005515
Pvu10g1160 603 SMART WD40_4 509 548 IPR001680 GO:0005515
Pvu10g1160 603 SMART WD40_4 374 414 IPR001680 GO:0005515
Pvu10g1160 603 SMART WD40_4 559 601 IPR001680 GO:0005515
Pvu10g1160 603 SMART WD40_4 460 498 IPR001680 GO:0005515
Pvu10g1160 603 Coils Coil 152 179 - -
Pvu10g1160 603 ProSitePatterns Trp-Asp (WD) repeats signature. 485 499 IPR019775 -
Pvu10g1160 603 SUPERFAMILY WD40 repeat-like 317 600 IPR036322 GO:0005515
Pvu10g1160 603 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 423 IPR001680 GO:0005515
Pvu10g1160 603 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1160 Pvu-Chr10 37413669 37418409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1160 368 500 Miscellaneous Gene Families AT5G08390 25.373 6.03e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1160 K16240 - gmx:100802144 741.11