Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1083 ATGGATTTGGGGAGAAAGAGCCAACACCTTCTATCCAAGATTGCCACCAATGACAAACATGGAGAGAATTCTCCATACTTTGATGGGTGGAAAGCATATGAGAGAAACCCATTTCACCCTACAAAGAACCCTCAAGGAGTTATCCAGATGGGTCTTGCAGAAAATCAACTATGCTTTGATCTGATTGAAGAGTGGATTCTGAATAATCCCAAGGCTTCCATCTGTACTCCCGAGGGAGTGCATCAGTTCAGAAACATTGCCAACTTTCAGGACTATCATGGGCTGAAGGAGTTCAGAAATGGTATTGCAAATTGGATGTCAAAAGTGAGAGGAGGTAGGGTCAGATTTGATCCGGACCGTATAGTGATGAGTGGAGGGGCAACAGGGGCAAACGAGCAAATCATGTTCTGCTTGGCTGATCATGGAGATGCCTTTATGATTCCCACCCCATTTTATCCAGGATTCGTACGTGACTTGTGTTGGAGAACCCAGATGCAATTAATTCCTGTCCACTGTCATAGCTCCAACAACTTCAAGATAACAAGAGAAGCTCTTGAAGAAGCATACAAAAAAGCCAAAGAGGACAACATCAACGTTAAGGGGTTGATCATAACAAACCCCTCTAACCCTTTGGGAACAACCTTAGACAAGGACACGTTGAAGAGCCTAGTGAGCTTCATCAACGAGAAAAACATCCACTTAGTTTGTGATGAAATCTACGCAGCAACTGTGTTCAGCAGTTCCCCCAGTTATGTAAGCGTGGTTGAAGTGATCCAAGAAATGGAACATTGCAAACGTGACCTAATTCATGTCATTTACAGTTTGTCCAAAGACATGGGGTTCCCTGGTTTCAGAGTTGGCATAATTTATTCATTCAACGATGAAGTGGTGGGATCTGCAAGGAAAATGTCCAGCTTCGGCTTAGTCTCCTCGCAGACTCAACACATGCTGGCATCGATGCTGTCGGATGAAAAGTTTGTGACGAAGTTTCTGTCGGAGAATTCAAGAAGGTTAGAGAAAAGGCACGACATGTTCATGAAGGGGCTTGAAGAGGTTAACATTACTTGGTTTCCAAGCAATGCAGGACTCTTCTTCTGGATGAACTTGAAGAGTTTGTTGAAGGAAGCAACGTTTGAAGCTGAGTTGAAGCTATGGCGTGTGATCATTCACGAGGTGAAGCTAAATGTGTCACCGGGCTCTTCTTTCAACTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCCAACATGGACGATGAAACAGTGGATGTTGCACTCAACAGGATTCGTGAACTCGTGGGGAAAGAAACAAAGAAGCCAGTGGGAATGAAAAGTTGGCAACCGAATCTTAGACTCAGTTTCAATTCAAGAATGTTTGATGAGAGTGTTATGTCTCCTCATTCACCTATTACATCACCTCTTGTTCAAGCCACTTGA 1437 0.4384 MDLGRKSQHLLSKIATNDKHGENSPYFDGWKAYERNPFHPTKNPQGVIQMGLAENQLCFDLIEEWILNNPKASICTPEGVHQFRNIANFQDYHGLKEFRNGIANWMSKVRGGRVRFDPDRIVMSGGATGANEQIMFCLADHGDAFMIPTPFYPGFVRDLCWRTQMQLIPVHCHSSNNFKITREALEEAYKKAKEDNINVKGLIITNPSNPLGTTLDKDTLKSLVSFINEKNIHLVCDEIYAATVFSSSPSYVSVVEVIQEMEHCKRDLIHVIYSLSKDMGFPGFRVGIIYSFNDEVVGSARKMSSFGLVSSQTQHMLASMLSDEKFVTKFLSENSRRLEKRHDMFMKGLEEVNITWFPSNAGLFFWMNLKSLLKEATFEAELKLWRVIIHEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVDVALNRIRELVGKETKKPVGMKSWQPNLRLSFNSRMFDESVMSPHSPITSPLVQAT* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1083 478 Coils Coil 175 202 - -
Pvu10g1083 478 Pfam Aminotransferase class I and II 48 429 IPR004839 GO:0009058|GO:0030170
Pvu10g1083 478 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
Pvu10g1083 478 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 449 - -
Pvu10g1083 478 CDD AAT_like 88 431 - -
Pvu10g1083 478 Gene3D Aspartate Aminotransferase, domain 1 36 428 IPR015422 GO:0003824
Pvu10g1083 478 Gene3D - 70 323 IPR015421 GO:0003824
Pvu10g1083 478 SUPERFAMILY PLP-dependent transferases 16 434 IPR015424 -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Pvu10g1083 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Pvu10g1083 478 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1083 Pvu-Chr10 36152691 36156455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1083 K20772 - gmx:100813347 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1083 10 36152691 36156455 Pvu10g1083 10 36152691 36156455 ECH
Pvu8g0594 8 5214801 5218083 Pvu10g1083 10 36152691 36156455 PCT