Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu10g1070 | ATGGGTAGTAAAACTCTGTTCAAGTGGCCAAAGCAAATCACAAATTCTCTAGTTGTGCAGTTAATTAAAGCAGAAAAGGACGTGCAAAAAGCTGTTACTATATTCGATACTGCAACTGCTGAATATAGTAATGGGTTTCGTCATGATCATGAAACTTTTGGTCTCATGATCGCTAGGTTAGTCGCAGTGAATCAGTTTAGAACAGCAGAAGGGATGCTTGAGAGAATGAAGCAAGAAGACTGTAAGGTTACAGAGGACATACTTTTAACTATATCCAGGGGTTATGGACGCGTGCATAGGCCACTTGATGCCATCAGAGTTTTCCACACAATGGAAGGTTTTCAGCTTAGGCCCACTCAAAAGGCTTACCTTACAATACTAGATATTCTTGTGGAGGAAAACCATGTAAAGAGGGCTATTGGTTATTACAGGGAGATGAGAGAAATGGGATTTCCACCTAGTGTTGTTTCCCTCAATATTTTGATCAAGGCCCTCTTGAAAAACAAGGAGACTGTTGATTCTGCCTTACAGATATTTCGGGAGATGCCCAACCGCGGGTGCCAGCCTGATTCATATACATATGGTACATTGATTAATGGGCTGTGTAGACTTGGAAATATCATTGAGGCAAAGGAAATATTCAAAGAGATGGAGCAGAAAGGTTTTTCAGCTTCTGTTGTTACCTATACTAGTTTGATACATGGCTTGTGTCAGTCTAATAATTTAGATGAAGCTATTGAATTGCTTGAAGAAATGAAAAGAAATGACATTGAACCAAATGTTTTTACGTATAGTTCTCTTATGGATGGTTTATGCAAAGGAGGTCATTCGTCACAAGCAATGGAGTTCTTGGAAGTGATGGTCAGGAAGAACCATTTACCCAACATGGTTACTTATAGTTCTTTAATCAGTGGACTGTGTAAAGAAGGAAAGCTTTGTGAAGCTGTGGAGATTCTTGACAGGATGAGGATTCAAGGCTTGAAACCAAGTGCAGGGTTGTATGGAAAAATCATAAGTGGCTTCTGCGCTGCTGGCAGCTTTCAAGAAGCTGCAAACTTCATTGATGAGATGGTGCTAGGTGGTATCTCACCAAATCGAGCAAGTTGGAGCCTTCATGTTAGGATGCATAACATGGTAGTCCAGGGTCTTTGTAATAATGTTGATCCAACTCGTGCATTTCAGTTGTATCTGAGCATGCGTACTAGAGGCATCTCTGTTGAAGTTGGCACTTTTGATTGTCTTGTCAAATGTTTTTGTAAGAGAGGAGACCTGCACAAAGCTGCTCGGATTCTTGATGAGATGGTGTTAGATGGATGCATTCCAGATGAACAAATATGGAATGTTGTAATTGGTGGACTTTGGGACCGAAAAAAAGTGAGAGAAGCCACTGAGCTGTTGCTGGTTGAGCTGAGACAGAAGTTTGTTGAAGCTAAAAGTTGA | 1440 | 0.4069 | MGSKTLFKWPKQITNSLVVQLIKAEKDVQKAVTIFDTATAEYSNGFRHDHETFGLMIARLVAVNQFRTAEGMLERMKQEDCKVTEDILLTISRGYGRVHRPLDAIRVFHTMEGFQLRPTQKAYLTILDILVEENHVKRAIGYYREMREMGFPPSVVSLNILIKALLKNKETVDSALQIFREMPNRGCQPDSYTYGTLINGLCRLGNIIEAKEIFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIELLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMEFLEVMVRKNHLPNMVTYSSLISGLCKEGKLCEAVEILDRMRIQGLKPSAGLYGKIISGFCAAGSFQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEVGTFDCLVKCFCKRGDLHKAARILDEMVLDGCIPDEQIWNVVIGGLWDRKKVREATELLLVELRQKFVEAKS* | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu10g1070 | 479 | SUPERFAMILY | HCP-like | 121 | 259 | - | - | |
| Pvu10g1070 | 479 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 3 | 473 | - | - | |
| Pvu10g1070 | 479 | Gene3D | Tetratricopeptide repeat domain | 171 | 275 | IPR011990 | GO:0005515 | |
| Pvu10g1070 | 479 | Gene3D | Tetratricopeptide repeat domain | 276 | 372 | IPR011990 | GO:0005515 | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 154 | 189 | IPR002885 | - | |
| Pvu10g1070 | 479 | PANTHER | EMP16 | 3 | 473 | - | - | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 119 | 153 | IPR002885 | - | |
| Pvu10g1070 | 479 | Gene3D | Tetratricopeptide repeat domain | 373 | 478 | IPR011990 | GO:0005515 | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | IPR002885 | - | |
| Pvu10g1070 | 479 | Gene3D | Tetratricopeptide repeat domain | 16 | 170 | IPR011990 | GO:0005515 | |
| Pvu10g1070 | 479 | Pfam | PPR repeat | 123 | 151 | IPR002885 | - | |
| Pvu10g1070 | 479 | Pfam | PPR repeat | 52 | 81 | IPR002885 | - | |
| Pvu10g1070 | 479 | Pfam | PPR repeat | 334 | 361 | IPR002885 | - | |
| Pvu10g1070 | 479 | Pfam | PPR repeat family | 153 | 203 | IPR002885 | - | |
| Pvu10g1070 | 479 | Pfam | PPR repeat family | 225 | 273 | IPR002885 | - | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 225 | 259 | IPR002885 | - | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 330 | 364 | IPR002885 | - | |
| Pvu10g1070 | 479 | Pfam | PPR repeat | 290 | 323 | IPR002885 | - | |
| Pvu10g1070 | 479 | Pfam | PPR repeat | 402 | 435 | IPR002885 | - | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 190 | 224 | IPR002885 | - | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 260 | 294 | IPR002885 | - | |
| Pvu10g1070 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 295 | 329 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 122 | 154 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 334 | 365 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 262 | 295 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 297 | 330 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 192 | 225 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 156 | 191 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 410 | 443 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 375 | 405 | IPR002885 | - | |
| Pvu10g1070 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 227 | 261 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu10g1070 | 45 | 466 | Glycosyltransferase | AT1G05670 | 29.147 | 2.61e-58 | 203 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu10g1070 | - | - | gmx:100794116 | 863.988 |