Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1050 ATGCTTTGCAAATTCCATTTCAAAAAGCAGCTTTGTTTCCCACCAACTGTTTATTCATTTGCCACTCAATGCACCCATTCATGGACACGCAGAGCTTCTATTCCATTTCCTGATAAAACCAACTTCTGGGACCCTCGCACTGCTCATTTATTTTGTGCCAATGCCCTCAAAGTCTCCGCCAAATGGGCCCTTTTTCCTGAAGGAAAACAGTTGCATGCCCATTTGATAAAGTTTGGATTTTGCCATGTTCTGTCCCTGCAAAATCAGATTTTGAGTGTTTATCTTAAGTGTAAGGAAACTAAAGATGCACAGAAACTGTTTGAGGAATTGCCTGTGAGAAATGTGGTCTCGTGGAACATTCTAATTCGGGGCTTCCTTGGATGTGGCAGTGCAATTGAAAATGAATCGAATTTACAGCTCTGTTTTTCTTATTTTAAAAGGATGCTGTTGGAAATGGTGGTTCCGGACGGTACAACTTTGAATGGTCTCATTGGTGTTTGTGCAAAGTTTCATGATATTGACGTGGGTTTCCAGTTGCATTGTTTTGCAGTGAAACTGAGACTTGATTTGGATTGTTTTGTTGGAAGTGTTCTTGTTGATTTATATGCTAAATGTGGCATGGTTAAGAATGCAAAGATGGTTTTTCATGTTGTTCCTCAAAGAGATTTGGTTATGTGGAATGTGATGATTTCTTGCTATGCCTTGAATCGTTCACCGGAAGAGGCTCTGAGAATGTTCAACTTGATGCGATCAGATGGTGCAAATGGAGACGAGTTCACTTTCAGCAGTTTGCTTAGTGTGTGTGATACTTTGGACTATTATGATTTTGGAAGGAAGCTTCATAGTCATATTCTGAAACAGTCATTTGATTCAGATGTGTTAGTAGCTAGTGCATTGATTAACATGTATGCGAAAAATGAAAATATAAGTGACGCACACAAACTGTTTGATAGGATGGTGATTAGAAATGTTGTGGCTTGGAACACCATTATCGTTGGGTCTGGGAATTGTGGAGAAGGGAATGAGGTTATGAAGCTTCTCAGAGAGATGCTTCACGAAGGGTTCCCCCCTGATGACCTAACTATTTCCAGCACTATTAGTTCATGTGGCTATGCTTGTGCCATTACTGAAACAATGATAGTTCATGCTTTTGCAGTTAAATCATCATTTCAAGAATTTGTATCTGTTGCTAATTCTCTGATTAGTGCGTACTCCAAGTGTGGTAGCATAACTAATGCATGTAAATGCTTCAGATTAACTTCAGAACCTGATATTATTACGTGGACTTCATTGATAAACGCATTTGCGTTCTATGGTCTTGCCAAAGAAGCAACTGAAACATTTGAGAAGATGGTATCTTGTGGAGTAATTCCAGATCGAATTTCTTTTCTTGGTGTTCTCTCAGCTTGTTCCCATTCTGGGCTTGTGGCTAAGGGACTTCACTACTTTAACTTGATGACCAGTATGTATCAGATTGTTCCTGAATCAGGGCATTATACCTGCCTTGTTGACCTTCTTGGAAGATATGGTCTTATAAATGAGGCTTTTGAATTCTTAAGGTCACTGCCAATGGAAGCTGAATCAAATACATTAGGAGCATTTATTGGATCCTGCAATGTTCATGGAAATATAGAACTGGCTAAATGGGCTGCAGAAAAGCTCTTCATCATAGAACCAGAGAAGAGTGTAAACTATGCAGTCATGTCTAACATTTATGCTTCCCATAGACATTGGTGTGATGTAGAAAGAGTTCGTGGAATGATGGGGAACAAGGGTGATGCAAGAGTCCCTGGTTGCAGCTGGATAGAAATTGGTAATCAAGTTCATTCGTTTGTATCCAATGACAAGACACACCCTAAAGCTTTAGAAATGTATGCTACATTGAAAATGCTACTTTGGCCAATGAAGGAAAAATATGGTATGAATTTGTGA 1932 0.3934 MLCKFHFKKQLCFPPTVYSFATQCTHSWTRRASIPFPDKTNFWDPRTAHLFCANALKVSAKWALFPEGKQLHAHLIKFGFCHVLSLQNQILSVYLKCKETKDAQKLFEELPVRNVVSWNILIRGFLGCGSAIENESNLQLCFSYFKRMLLEMVVPDGTTLNGLIGVCAKFHDIDVGFQLHCFAVKLRLDLDCFVGSVLVDLYAKCGMVKNAKMVFHVVPQRDLVMWNVMISCYALNRSPEEALRMFNLMRSDGANGDEFTFSSLLSVCDTLDYYDFGRKLHSHILKQSFDSDVLVASALINMYAKNENISDAHKLFDRMVIRNVVAWNTIIVGSGNCGEGNEVMKLLREMLHEGFPPDDLTISSTISSCGYACAITETMIVHAFAVKSSFQEFVSVANSLISAYSKCGSITNACKCFRLTSEPDIITWTSLINAFAFYGLAKEATETFEKMVSCGVIPDRISFLGVLSACSHSGLVAKGLHYFNLMTSMYQIVPESGHYTCLVDLLGRYGLINEAFEFLRSLPMEAESNTLGAFIGSCNVHGNIELAKWAAEKLFIIEPEKSVNYAVMSNIYASHRHWCDVERVRGMMGNKGDARVPGCSWIEIGNQVHSFVSNDKTHPKALEMYATLKMLLWPMKEKYGMNL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1050 643 Gene3D Tetratricopeptide repeat domain 394 630 IPR011990 GO:0005515
Pvu10g1050 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Pvu10g1050 643 Pfam E motif 541 603 IPR046848 -
Pvu10g1050 643 TIGRFAM PPR: pentatricopeptide repeat domain 224 253 IPR002885 -
Pvu10g1050 643 TIGRFAM PPR: pentatricopeptide repeat domain 297 325 IPR002885 -
Pvu10g1050 643 TIGRFAM PPR: pentatricopeptide repeat domain 426 459 IPR002885 -
Pvu10g1050 643 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Pvu10g1050 643 PANTHER OS07G0259400 PROTEIN 31 623 - -
Pvu10g1050 643 Pfam PPR repeat 498 521 IPR002885 -
Pvu10g1050 643 Pfam PPR repeat 398 418 IPR002885 -
Pvu10g1050 643 Pfam PPR repeat 197 216 IPR002885 -
Pvu10g1050 643 Pfam PPR repeat family 322 369 IPR002885 -
Pvu10g1050 643 Pfam PPR repeat family 423 471 IPR002885 -
Pvu10g1050 643 Pfam PPR repeat family 222 268 IPR002885 -
Pvu10g1050 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Pvu10g1050 643 PANTHER OS07G0578800 PROTEIN-RELATED 31 623 IPR045215 GO:0003723|GO:0009451
Pvu10g1050 643 Gene3D Tetratricopeptide repeat domain 47 181 IPR011990 GO:0005515
Pvu10g1050 643 Gene3D Tetratricopeptide repeat domain 273 374 IPR011990 GO:0005515
Pvu10g1050 643 Gene3D Tetratricopeptide repeat domain 182 272 IPR011990 GO:0005515
Pvu10g1050 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1050 Pvu-Chr10 35646478 35648501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1050 90 637 Glycoside Hydrolase AT3G49170 32.554 6.08e-100 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1050 - - ccaj:109802654 1110.52