Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1046 ATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAACGATGGAATGCAAGAGTTCTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTTTACCACAACTTCTTCTGTATCCCAATCCGTCAGACCCCTTGAATGGAGAAGCTGCAGCTTTACTGATGCGTGATCGAACCAGTTATGAACAAAGGGTTAAAGAATACTGTGAGAAGTATGCTAAACCTGAGGACATAGGAGCTGCAACAGAAGAACAATCCAGTGATGAGGAGCTAAGTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGATCCCTAG 552 0.4221 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRTSYEQRVKEYCEKYAKPEDIGAATEEQSSDEELSEDEYDSSDEQVAGKADP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1046 183 MobiDBLite consensus disorder prediction 150 183 - -
Pvu10g1046 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Pvu10g1046 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Pvu10g1046 183 MobiDBLite consensus disorder prediction 156 172 - -
Pvu10g1046 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Pvu10g1046 183 CDD UBCc 7 143 IPR000608 -
Pvu10g1046 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Pvu10g1046 183 SMART ubc_7 4 148 - -
Pvu10g1046 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Pvu10g1046 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Pvu10g1046 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1046 Pvu-Chr10 35585976 35588616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1046 3 150 Miscellaneous Gene Families AT3G17000 22.293 2.67e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1046 K10576 - gmx:100804969 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1046 10 35585976 35588616 Pvu10g1046 10 35585976 35588616 ECH
Pvu8g0619 8 5523838 5526604 Pvu10g1046 10 35585976 35588616 PCT