LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g1015	ATGCAAGCACTACGTTTTGATTGCACTATTCAGGTGCCCAGATTCTCAAGTACTACAACTCCTCCAAATTTTGCATCTTTTTTGCCCACCCTGAGTCCCTCCAAGGCTGGAACTAGATTGTGTTTGACTTTTGGTTGTGGGCTTTACAAACCCCTCAGGAAGACTAGGTGGGATGGGTTTGGGGTGCAGTGTGCAACCTCCAATGGAGAAAGTGGTGATGGGTTTTACATAAGAAGATGTGTGGAGCTTGCAAGGAAGGCTGTTGGGTATACCAGCCCCAATCCATTGGTGGGGTGTGTTATTGTAAAGGATGGGGTAGTTGTTGGTGAAGGGTACCACCCTAGAGCAGGGCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGGTGATTTGGCACAAAGTGCAACTGCTTATGTGAGCTTGGAACCTTGTAATCATTTTGGTAGGACTCCACCTTGTACTGAAGCTCTAATTAAAGCCAAAGTGAAAAAGGTTGTTGTTGGCATGGTGGATCCAAATCCCATCGTCGCCTTCAAAGGGGTGGAAAGATTGAGAGATGCAGGAATTGAAGTTGTTGTGGGTGTAGAGGAAGAGTTGTGCAAGAGCCTCAATGAGCCTTACATTCATCGCATGCTGACGGGAAAGCCTTTACTTACTTTGAGATATTCTCTTTCTGTCAATGGAAACTTTTTGGACTTACTTGGGAATGGTGTTACAGACTGTGGTGGTTACTATTCAAGGCTATTACAGGAATATGATGCAGTGATAATCTCTTCTTCCTTTTTCACTGAAAATTTTAAAGTACCTTCATCTCAAGAACCTGGAGCCAACCAACCAATTCTGATTATAACACATAAGGATCCTAATTCTTTAAATCAAATTCCACCATCCATCAATGACATTACGGGCAAAATGATAATCTTTACAGAAAATAAAGCAGGAGCAGCTCCAGAAGTGTCTCTACAAGGAATTGAAACTGTAGCTCTGGATCAAATAAATCTGGATGTGATAATGGATTATTGTAACCGTCAAGGATTGTGCAGTGCTCTGTTAGATATTAGGGGGAGTTTCAGTGAGTTTGAAGAGCTTGTTAAGGAGGGTATCAAGAAGAACTATATTAATAAATTTATCACAGAAATTTTGCCTGTTTGGAACAAACGTCCTGAGCCAGATCCTCTACAGGCATTGAAGAGCTTAGAGCAAGGAGTGAAAGTGCTAAATTTGAAGTCCAAGGCCTCTGATCAGAGTGTTGTAATTGAGGGATATTTTAAATCTGAGTAA	1284	0.4206	MQALRFDCTIQVPRFSSTTTPPNFASFLPTLSPSKAGTRLCLTFGCGLYKPLRKTRWDGFGVQCATSNGESGDGFYIRRCVELARKAVGYTSPNPLVGCVIVKDGVVVGEGYHPRAGQPHAEVFALRDAGDLAQSATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVVGMVDPNPIVAFKGVERLRDAGIEVVVGVEEELCKSLNEPYIHRMLTGKPLLTLRYSLSVNGNFLDLLGNGVTDCGGYYSRLLQEYDAVIISSSFFTENFKVPSSQEPGANQPILIITHKDPNSLNQIPPSINDITGKMIIFTENKAGAAPEVSLQGIETVALDQINLDVIMDYCNRQGLCSALLDIRGSFSEFEELVKEGIKKNYINKFITEILPVWNKRPEPDPLQALKSLEQGVKVLNLKSKASDQSVVIEGYFKSE*	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g1015	427	ProSitePatterns	Cytidine and deoxycytidylate deaminases zinc-binding region signature.	120	158	IPR016192	GO:0008270\|GO:0016787
	Pvu10g1015	427	Pfam	Cytidine and deoxycytidylate deaminase zinc-binding region	76	170	IPR002125	-
	Pvu10g1015	427	TIGRFAM	eubact_ribD: riboflavin biosynthesis protein RibD	78	354	IPR004794	GO:0008835\|GO:0009231
	Pvu10g1015	427	CDD	Riboflavin_deaminase-reductase	77	189	-	-
	Pvu10g1015	427	SUPERFAMILY	Cytidine deaminase-like	74	212	IPR016193	GO:0003824
	Pvu10g1015	427	PANTHER	RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC	53	262	-	-
	Pvu10g1015	427	Gene3D	Dihydrofolate Reductase, subunit A	211	424	IPR024072	-
	Pvu10g1015	427	PANTHER	CYTOSINE DEAMINASE FAMILY MEMBER	53	262	-	-
	Pvu10g1015	427	Gene3D	Cytidine Deaminase, domain 2	63	210	-	-
	Pvu10g1015	427	ProSiteProfiles	Cytidine and deoxycytidylate deaminases domain profile.	71	193	IPR002125	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g1015	K11752		-	gmx:100786393	663.299

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu10g1015	10	35101784	35104687	Pvu10g1015	10	35101784	35104687	ECH