LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0976	ATGGCTACCATTTCTGCTTCCCTAGCTCGCTTCTGCGTTATCTCGCGACCTTCCTCCAACTCACAGTATATCCTCTTCAACGTCGCGCCTCGAACCGGAACCCCCAATTCCCGAACCGGCTCGGCCCGGTTCAGGTGCTCAGCCGGCCAGACCGGGTTCTTCACGAAACTGGGCCGTTTGATTAAGGAGAAGGCGAAGAGTGACGTGGAGAAGGTGTTCTCGGGATTCTCCAAGACCCGCAACAACCTCGCCGTCATCGACGAGCTTCTCCTCTACTGGAACCTCGCTGACACAGACCGAGTCCTTGACGAACTCGAAGAGGCTCTTTTAGTGTCTGATTTTGGCCCGAAAATCACTATTAAAATAGTGGAGAATTTGCGTGAGGATATATTGTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCATTGAAGAGGAATGTTTTGGAATTGTTAACCTCTAAGGGAAGTAAAACTGAACTTCAACTTGGATTCAGGAAACCGGCTGTAATAATGATAGTTGGTGTTAATGGTGGAGGGAAGACAACATCTTTGGGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGCTAAGATATTGCTGGCGGCTGGTGATACATTTAGAGCTGCTGCTAGTGATCAGTTGGAAATATGGGCCGAAAGGACTGGATGTGAGATTGTTATGGCTGAATCAGAGAAAGCAAAAGCATCATCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAACAGCTCGGTTTTGATGTAGTATTATGTGATACATCTGGTCGTCTACACACTAATTACAGCTTAATGGAAGAGTTGATTTCCTGTAAAAAGTCTGTTGCTAAAGTCATTCCTGGTGCACCCAATGAGATCCTACTGGTTCTGGATGGGACCACTGGTCTGAATATGTTGCCACAAGCAAGAGAATTCAATGATGTTGTGGGTGTCACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTTAGCGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTCGGGGAAGGTGTTGAAGATCTTCAACCCTTTGATGCGGATGCCTTTGTCAACGCCATTTTTATGTAA	1116	0.4624	MATISASLARFCVISRPSSNSQYILFNVAPRTGTPNSRTGSARFRCSAGQTGFFTKLGRLIKEKAKSDVEKVFSGFSKTRNNLAVIDELLLYWNLADTDRVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGNEIKEALKRNVLELLTSKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILLAAGDTFRAAASDQLEIWAERTGCEIVMAESEKAKASSVLSQAVKKGKQLGFDVVLCDTSGRLHTNYSLMEELISCKKSVAKVIPGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDADAFVNAIFM*	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0976	371	SMART	SRP54_3	169	371	IPR000897	GO:0005525\|GO:0006614
	Pvu10g0976	371	PANTHER	BNAA04G26420D PROTEIN	27	370	-	-
	Pvu10g0976	371	Gene3D	-	59	160	IPR042101	-
	Pvu10g0976	371	TIGRFAM	ftsY: signal recognition particle-docking protein FtsY	98	370	IPR004390	GO:0006614
	Pvu10g0976	371	ProSitePatterns	SRP54-type proteins GTP-binding domain signature.	344	357	IPR000897	GO:0005525\|GO:0006614
	Pvu10g0976	371	SMART	SRP54_N_2	72	153	IPR013822	GO:0005525\|GO:0006614
	Pvu10g0976	371	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	166	369	IPR027417	-
	Pvu10g0976	371	Pfam	SRP54-type protein, helical bundle domain	98	147	IPR013822	GO:0005525\|GO:0006614
	Pvu10g0976	371	SUPERFAMILY	Domain of the SRP/SRP receptor G-proteins	69	146	IPR036225	-
	Pvu10g0976	371	SMART	AAA_5	168	341	IPR003593	-
	Pvu10g0976	371	CDD	FtsY	170	369	-	-
	Pvu10g0976	371	PANTHER	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	27	370	-	-
	Pvu10g0976	371	Gene3D	-	161	371	IPR027417	-
	Pvu10g0976	371	Pfam	SRP54-type protein, GTPase domain	169	370	IPR000897	GO:0005525\|GO:0006614

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0976	Pvu-Chr10	34540345	34546858	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0976	K03110		-	gmx:100791073	682.559

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu10g0976	10	34540345	34546858	Pvu10g0976	10	34540345	34546858	ECH