Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0972 ATGCACACAAGCTTGGCGCCAATTATCCGCAGGCCCAAACTCGTTCCACTCTCAAATCTCTCTCGCTCTCTTTCACCTCACAACTCCCAAAATGCACCCTCAAAACACAACATCGCCACCATCATTCACTCCCTCTGCGACGCTCGCCGTTTCTCCGAAGCACACCATCGCTTCTCCCTCTCCCTCGTCTCCGGCTCCCTCCCCGACGCGCGCACCTGCAACGTCCTCCTCGCTCGCATTCTCGCTTCTCGAACCCCTCACGCAACGTGGCGCCTCATCCAATCCCTTATCGCTTCCAAGCCCGGTTTCGTTCCCTCTTTGGTCAACTACAACCGTCTGATGGACCAGTTTTGCGTTGCCCATCAACCCCTGGACGCTCACAGGCTGTTTTTTGACATGAAGAGCCGTGGGCATTGCCCAAATGTTGTCTCTTTCACCACTTTGATTAAAGGGTACTGCTTGGTTCGTGGAATTAGGGACGCGCGCAAGGTGTTCGATGAAATGCTTGAGAGTGGCGTGGAGCCGAATTCGGTGACTTACAGTGTTTTGATTCGCGGTGTTCTTCGGGAGAGGGATGTGGAAGGTGGGAGGGAGTTGATGTGCAGGTTGTGGGAGATGATGAGTGTGGAAGCTGAAGATTCGGTGAAGACCGCGGCTTTTGCAAATTTGGTTGATTCTTTGTGCAGGGAGGGGTTTTTTGGTGAAGTGTTTAGGATAGCTGAGGAGTTGCCGTTCGGGAGTGGTTTTTCTGAGGAGGTTGCTTATGGACAGATGGTGGATTCACTTTGCAGAGTTGGGAGGCATAATGGGGCAGCTAGGATTTTTTATGTAATGAGGAAAAGAGGGTTTGTTCCGAGTGAGGTGTCGTATAATTATGTCATTCATGGGCTTAGCAGGGATGGTGATTGTATGAGGGCTTATCAGTTGTTAGAGGAAGGAGCCGAATTTGGGTTTATTTTGTCTGAGCATACTTATAAGGTACTCGTGGAAGCTCTTTGCGAAGTGTTGGATGTGGACAAGGCGAAGGAAGTTTTGAAACTCATGCTGAGTAAGGAAGGTGTTAACAAGACTAGGATTTACAACATTTACTTGAGAGCTCTTTGTCTTGTGAACAATCCGACAGAGCTTTTGAATGTGCTTGTGTTTATGCTTGAGAACCAGTGTCACGCTGACGTGATCACCCTCAACACGGTGATCAATGGCTTTTGCAAGATGGGTAGGGTTGATGAAGCATCTAAGGTATTGCATGATATGTTAATGGGAAAATTTGCTGCACCTGATGTTGTGACCTTCACTACTTTGATTTCTGGTATGTTGGATGCTGCAAGAATCAATGAAGCTCTTGATCTGTTTCATAAGCTGATGCCTGAAAATGGAATAAAACCTAGTGTTGTGACTTATAATGCTCTTCTCCGAGGTTTGTTCAAACTAAAGCGACCAAATGATGCATTGATGGTTCTTGATGACATGGTAAATGATGGCATTACGGCAGATAGTACCACATATACAGTTGTTGTAGAAGGCCTATGTGAATCTGACCAAGTAGAAGAAGCAAAGAGATTTTGGCACAATGTTATATGGCCTTCAGGGGTTCATGATAATTTTGTTTATGCAGCAATTCTGAAAGGGTTCTGCCGCTCTGGCAATTTTATGGAGGCTTGTCATTTCTTGTATGAGTTGGTAGATTCTGGGGTCTCTCCGAATATATTTAGTTATAATATTCTGATCAACTGTGCGTGCAATCTTGGTCTGAAAAGTGAAGCTTACCAAATTGTCAGAGAGATGAAAAAGAATGGACTCACTCCTGATTCTGTGACATGGAGAATTCTTGACAAGTTAAATGGCAAAGAGGGGAAGGACATCGATTTTGAAGATCCTACCATGTCAACATTTGATGAGGCATGA 1905 0.4583 MHTSLAPIIRRPKLVPLSNLSRSLSPHNSQNAPSKHNIATIIHSLCDARRFSEAHHRFSLSLVSGSLPDARTCNVLLARILASRTPHATWRLIQSLIASKPGFVPSLVNYNRLMDQFCVAHQPLDAHRLFFDMKSRGHCPNVVSFTTLIKGYCLVRGIRDARKVFDEMLESGVEPNSVTYSVLIRGVLRERDVEGGRELMCRLWEMMSVEAEDSVKTAAFANLVDSLCREGFFGEVFRIAEELPFGSGFSEEVAYGQMVDSLCRVGRHNGAARIFYVMRKRGFVPSEVSYNYVIHGLSRDGDCMRAYQLLEEGAEFGFILSEHTYKVLVEALCEVLDVDKAKEVLKLMLSKEGVNKTRIYNIYLRALCLVNNPTELLNVLVFMLENQCHADVITLNTVINGFCKMGRVDEASKVLHDMLMGKFAAPDVVTFTTLISGMLDAARINEALDLFHKLMPENGIKPSVVTYNALLRGLFKLKRPNDALMVLDDMVNDGITADSTTYTVVVEGLCESDQVEEAKRFWHNVIWPSGVHDNFVYAAILKGFCRSGNFMEACHFLYELVDSGVSPNIFSYNILINCACNLGLKSEAYQIVREMKKNGLTPDSVTWRILDKLNGKEGKDIDFEDPTMSTFDEA* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Pvu10g0972 634 Gene3D Tetratricopeptide repeat domain 457 526 IPR011990 GO:0005515
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat 536 565 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat 109 137 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat 324 351 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat 387 418 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat 426 453 IPR002885 -
Pvu10g0972 634 Gene3D Tetratricopeptide repeat domain 527 620 IPR011990 GO:0005515
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 462 IPR002885 -
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Pvu10g0972 634 PANTHER OS07G0674300 PROTEIN 30 629 - -
Pvu10g0972 634 Gene3D Tetratricopeptide repeat domain 32 217 IPR011990 GO:0005515
Pvu10g0972 634 Gene3D Tetratricopeptide repeat domain 358 454 IPR011990 GO:0005515
Pvu10g0972 634 Gene3D Tetratricopeptide repeat domain 218 357 IPR011990 GO:0005515
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 323 351 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 143 177 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 429 464 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 536 569 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 110 142 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 253 287 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 570 604 IPR002885 -
Pvu10g0972 634 TIGRFAM PPR: pentatricopeptide repeat domain 393 423 IPR002885 -
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Pvu10g0972 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat family 140 187 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat family 567 610 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat family 462 510 IPR002885 -
Pvu10g0972 634 Pfam PPR repeat family 253 298 IPR002885 -
Pvu10g0972 634 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 30 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0972 Pvu-Chr10 34398663 34401112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0972 160 619 Glycosyltransferase AT1G05670 24.678 2.37e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0972 - - gmx:106796792 1103.58